Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02197 ATGGCAACTACATATTTCCCACTGAGGTGGGAGAGCACTGGGGATCAGTGGTGGTATGCATCCCCAATAGATTGTGCTGCAGCAAATGGACACTATGACTTGGTTCGTGAGCTGCTTAAAATCGACAACAACCACCTCTTCAAGCTCACTTCATTGCGCAGAATTCGCCGTCTTGAAGTTGTGTGGGACGATGAAGAACAGTTCAGTGATGTTGCAAAGTGCCGGTCACAGGTTGCACAGAAGTTGCTTCTTGAGTGCGAGTCAAAGAGAGGGAAGAACAAGAACTCTCTCATCCGTGCTGGGTATGGGGGGTGGCTAATGTACACCGCTGCATCAGCTGGGGACTTGAGTTTTGTGCAACAACTTCTTGAGAGGAACCCTTTGTTGGTGTTCGGAGAGGGGGAGTATAATGTCACTGATATCTTTTATGCTGCTTCCAGGGGCAAGAATTGTGAGGTTTTTAGGCAGATTTTTGATTTTGCAGTTTCTCCAAGGTTTGTCACAGGCAAAGGTGGGGTTTTGGAGGAGCATGTTGGGGATATTCCTCCTGTTTACAAGTGGGAGATGAGCAATAGGGCTGTCCATGCCGCTGCTAGAGGGGGCAGTGTGGAGATTTTGGAGGAGTTTCTTGCTAATTGCACTGATGTGTTGGCTTATAGAGATGCTCAGGGCTCTACTATATTGCATTCTGCTGCAGGCAGAGGGCAGGTTGAGGTGGTTAAGTATCTCACATCATCCTTTGACATAATAAACTCCACAGACCATCAGGGAAACTCTGCTTTGCATGTGGCAGCTTACAGGGGCCAATTAGCTGCAGTTGAGGCTCTAGTTTCTGCTTGTCCTGCATTGGTTTCTAAGAGAAACAATGGGGGAGACACTTTCCTCCATAAAGCTGTGTCTGGTTTTCAGTCTACCTCATTCAGAAGGTTGGACAGACAAGTTGAATTTTTGAGGCAGTTAGTAAGTTGCAAAAACTTTCACATAGAGGAAGTCATGAATGTAAAGAACACTGATGGAAGAACTGCACTCCACATTGGCACAATGGGTAAAATCCATGCCGATCTTGTTAAGCTCCTGATGACTGCTCCATCAGTGAATGTGAATGTGGGTGATTGTAATGGCTTGACCCCACTTGATTACCTTAAGCAAAGTCCAAACACAGCAGCATCAAATGTACTGATCAGGAAGTTGGTTGCAGCTGGGGGAATGTTCCACAGTCAAGGCTATAATTCAAGAAAAGCCACAGCTTCACACATGAAAATGCATAGTATTGGAGGCAGTCCTGGAACATCGTTTAGAATCTCAGACACTCAGATGTTCTTGTACACAGGAATTGAGAATGCATCAGATGCCAGTACGGATCAGGGAAGTGTAGGAATGAGTTCATCTTCATCAGACCATACTGCATATGACTCAGCAGCAGAAAACAGACCCTCAACAAGCATAAGGCCATCCGCGGCTGCCGGGTTGAAACGAGTCCTTCAGTGGCCACTGGTGAAGGACAAGAAAGGTGAGGGGTTAAGGAAATCAATGGATGAAGGTTCAGTGGATTCATGCAGGAAATGGGACACAACAGATGAAATTCCAACTCCACTAAGACAAAAGTTCTTCAGGCATTCAGCTCTTCAAAACAACAAAAGGAATCTATCTGTAAGGAGTTACCAGTCAAGTCCAAATGCTAAGAAGAGATTTGCTTCAGGACTGGTACACGTGAAGGTTTCAAGAAGATCAAGCTCTAGCTCATTTTCTATATCATCATTGTCATCACCTAGATCCATAGATAAGCAAAAGGGTTTTTGTCTTGACAATGATGTTGCTGGACCGTCTTGCACAAATAACCAAAATGATAAATCAACAATTTCAGGGAAGAGAGCTTCTGTCAGCAAAAAGCTAAGGGGCCATTATTTCTGTTTTTCAAAAGCCTCAGTAGACAGGGAGCAAGAAAGCCATTGTTACAAGGACCATGATGTTTATGTGAGTGGCCTTATTGGATGA 1995 0.4481 MATTYFPLRWESTGDQWWYASPIDCAAANGHYDLVRELLKIDNNHLFKLTSLRRIRRLEVVWDDEEQFSDVAKCRSQVAQKLLLECESKRGKNKNSLIRAGYGGWLMYTAASAGDLSFVQQLLERNPLLVFGEGEYNVTDIFYAASRGKNCEVFRQIFDFAVSPRFVTGKGGVLEEHVGDIPPVYKWEMSNRAVHAAARGGSVEILEEFLANCTDVLAYRDAQGSTILHSAAGRGQVEVVKYLTSSFDIINSTDHQGNSALHVAAYRGQLAAVEALVSACPALVSKRNNGGDTFLHKAVSGFQSTSFRRLDRQVEFLRQLVSCKNFHIEEVMNVKNTDGRTALHIGTMGKIHADLVKLLMTAPSVNVNVGDCNGLTPLDYLKQSPNTAASNVLIRKLVAAGGMFHSQGYNSRKATASHMKMHSIGGSPGTSFRISDTQMFLYTGIENASDASTDQGSVGMSSSSSDHTAYDSAAENRPSTSIRPSAAAGLKRVLQWPLVKDKKGEGLRKSMDEGSVDSCRKWDTTDEIPTPLRQKFFRHSALQNNKRNLSVRSYQSSPNAKKRFASGLVHVKVSRRSSSSSFSISSLSSPRSIDKQKGFCLDNDVAGPSCTNNQNDKSTISGKRASVSKKLRGHYFCFSKASVDREQESHCYKDHDVYVSGLIG 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02197 664 Gene3D - 316 398 IPR036770 -
Viun5g02197 664 MobiDBLite consensus disorder prediction 451 482 - -
Viun5g02197 664 PANTHER ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED 2 449 - -
Viun5g02197 664 SUPERFAMILY Ankyrin repeat 22 395 IPR036770 -
Viun5g02197 664 ProSiteProfiles Ankyrin repeat region circular profile. 223 243 - -
Viun5g02197 664 ProSiteProfiles Ankyrin repeat profile. 256 278 IPR002110 GO:0005515
Viun5g02197 664 Pfam Ankyrin repeats (many copies) 225 277 IPR002110 GO:0005515
Viun5g02197 664 Gene3D - 261 315 IPR036770 -
Viun5g02197 664 ProSiteProfiles Ankyrin repeat profile. 223 255 IPR002110 GO:0005515
Viun5g02197 664 SMART ANK_2a 189 218 IPR002110 GO:0005515
Viun5g02197 664 SMART ANK_2a 136 166 IPR002110 GO:0005515
Viun5g02197 664 SMART ANK_2a 338 369 IPR002110 GO:0005515
Viun5g02197 664 SMART ANK_2a 223 252 IPR002110 GO:0005515
Viun5g02197 664 SMART ANK_2a 290 328 IPR002110 GO:0005515
Viun5g02197 664 SMART ANK_2a 18 47 IPR002110 GO:0005515
Viun5g02197 664 SMART ANK_2a 102 131 IPR002110 GO:0005515
Viun5g02197 664 SMART ANK_2a 256 285 IPR002110 GO:0005515
Viun5g02197 664 ProSiteProfiles Ankyrin repeat region circular profile. 256 278 - -
Viun5g02197 664 Gene3D - 13 174 IPR036770 -
Viun5g02197 664 Gene3D - 183 260 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02197 Viun-Chr5 28119222 28122326 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02197 195 389 Miscellaneous Gene Families AT5G60070 32.039 5.65e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02197 - - gmx:100781079 1152.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g02197 5 28119222 28122326 Viun5g02197 5 28119222 28122326 ECH