Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03324 ATGTCTCTTCCGTCGTATTTTCCTCTTCGTTGGGAAAGCACGTGCCAACAATGGTGGTACGCATCACCAATCGACTTAGCAGCCTCAAACGGCCACTACGATCTCGTCATCGAGCTTCTCCACCTCGACACAAACCTCTTAATCAAACTCACTTCCCTCCAAAGAATCCGCCGCCTCGAAACTCTTTGGGACGACGACGAGTCACAGTTCCATGGCGTCGCCAAATGCCGCTCCCAGGTTGCCAGAAAACTCATGCTCGAATGCGAAACGGGGAATAGAAACTCTCTTGTTAAAGCTGGATATGGTGGATGGCTTCTTTACACTGCTGCTTCTGCTGGTGACGTGGATTTTGTAACTGAATTGTTGAGAAGAGAGGCTTCTCTTGTTTTTGGTGAAGGTGAGTATGGTGTTACTGATATTTTGTATGCTGCTGCGAGGAGTAAGAATTGTGAGGTTTTTAGGATTGTGTTTGATTATGCAATGTTGAAAAATAGTGGAGAAGTGTTGAATTTGGATGAGGTTTTTAAGATGGATATGGTGAATAGAGCAGTTCATGCCGCGGCTAGAGGTGGTAATTGGGAGATACTCAATGAGTTTGTTGGAAGTGTTCATGACATTTTAGCTTATAGAGATTCTCATGGTTGTACTGTTTTGCATTCAGCAGCTGCTACAGGACAAGTTGAGGTGGTGAGAAAGCTACTTGAATCTTTTGATATTATCAACTTAAGAGATGATCACGGGAACACGGCGTTACATGTAGCTTGTTACAGGGGTTACTTACCTGTGGTAGAGATTCTAATAGACGCATCTCCTTTGTTAGCAATGTTAGTCAACAATCATGGAGATACTTTACTTCATTTGGCAGTGGCTGGTTTCAAAAGTCCTGGTTTCTGTAGACTAGACAAGCATGCCGAACTCATGAAGCGATTGGTGAGTGAAAAGATTGTGAAGACACGGGAGATTGTTAACTTAAAGAACAAGGATGGAAGAACTGCTCTTCATGTATCCGTGATTGATAACATCCAAGTTGAGGTAGTGGAATTGTTGATGTCTTTGCCATCAATTGATTTGAATGTTTGTGATGTTGATGGGCTGACCCCTTTAGATCTTTTGAAGCAAAGGTCACGGTCGACGTCTTCTGATTTTTTAATCAAAAGGTTGATTTCTGCGGGAGGGGTGAATCGTGAACTTATTTCGAACAATTCTGAATCAAGTTGTAGTGTGCAGCCGCTGCAGAAGATTCAAATCGGTGTAAATGGAACGAGTCCTGGTACTTTGTTTAGAATACCAGATGCAGAGATATTCTTGTACACCGGCATTGAGAATGCATCTGATGCCAATTATGTTCAAACTAGTCCTGAATCATATTCTTGCTCAAGTGAACTAAGTAACTCTGATGGTGCCGATTCTCCATATAACAACAAATCTAGCTCGGTTAATAACGCTGCAAGACGCTTAAAGTTTCTTCTAAGGTGGCGTAGGAGAAAAGGCAGAAAAGCCGCTTTCTCCGATTTGGAAGATGATGATTCTCTTGATCCTTTTAGTTCAAGTAGAAACTTGGATGAGGTTTCAATCCCATTAAGGCAAAGATACTCGCAATCATGTTCCCCTAGAACACATTCGATAAGGAATTTTCTTCCAAGTCCATCCTCCAAAATGAATTTCACTACAGGCCTCATCCAAGGAGTAATTCAGCTAAATCCACATGTTACTCTTCCTGCTCATTCAACTCCTAATCTTTTTCAAGAGTTGTCTGTGGTTTCTCTTTCTTCGAACAATAAACAAAAGAATCTCGATATAATGGGACCCTCTTGCTCAAATCGATTGAACTACAAACAAGATTCTTTCAATAAGAAATTGATGAATCCTTATCTTTCTTTCGGAGCACAAGACCTCATGAACATCAATGATTCAAATAGCTGTGAATCAAATCGGAGTTATAAGCATTTCAGTTCGTTAGTTGCATAG 1968 0.4126 MSLPSYFPLRWESTCQQWWYASPIDLAASNGHYDLVIELLHLDTNLLIKLTSLQRIRRLETLWDDDESQFHGVAKCRSQVARKLMLECETGNRNSLVKAGYGGWLLYTAASAGDVDFVTELLRREASLVFGEGEYGVTDILYAAARSKNCEVFRIVFDYAMLKNSGEVLNLDEVFKMDMVNRAVHAAARGGNWEILNEFVGSVHDILAYRDSHGCTVLHSAAATGQVEVVRKLLESFDIINLRDDHGNTALHVACYRGYLPVVEILIDASPLLAMLVNNHGDTLLHLAVAGFKSPGFCRLDKHAELMKRLVSEKIVKTREIVNLKNKDGRTALHVSVIDNIQVEVVELLMSLPSIDLNVCDVDGLTPLDLLKQRSRSTSSDFLIKRLISAGGVNRELISNNSESSCSVQPLQKIQIGVNGTSPGTLFRIPDAEIFLYTGIENASDANYVQTSPESYSCSSELSNSDGADSPYNNKSSSVNNAARRLKFLLRWRRRKGRKAAFSDLEDDDSLDPFSSSRNLDEVSIPLRQRYSQSCSPRTHSIRNFLPSPSSKMNFTTGLIQGVIQLNPHVTLPAHSTPNLFQELSVVSLSSNNKQKNLDIMGPSCSNRLNYKQDSFNKKLMNPYLSFGAQDLMNINDSNSCESNRSYKHFSSLVA 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03324 655 Gene3D - 11 412 IPR036770 -
Vivi3g03324 655 ProSiteProfiles Ankyrin repeat region circular profile. 246 268 - -
Vivi3g03324 655 ProSiteProfiles Ankyrin repeat profile. 246 268 IPR002110 GO:0005515
Vivi3g03324 655 ProSiteProfiles Ankyrin repeat region circular profile. 213 245 - -
Vivi3g03324 655 SUPERFAMILY Ankyrin repeat 105 384 IPR036770 -
Vivi3g03324 655 MobiDBLite consensus disorder prediction 459 478 - -
Vivi3g03324 655 ProSiteProfiles Ankyrin repeat profile. 213 245 IPR002110 GO:0005515
Vivi3g03324 655 PANTHER ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED 3 392 - -
Vivi3g03324 655 SMART ANK_2a 101 130 IPR002110 GO:0005515
Vivi3g03324 655 SMART ANK_2a 280 319 IPR002110 GO:0005515
Vivi3g03324 655 SMART ANK_2a 179 208 IPR002110 GO:0005515
Vivi3g03324 655 SMART ANK_2a 135 165 IPR002110 GO:0005515
Vivi3g03324 655 SMART ANK_2a 213 242 IPR002110 GO:0005515
Vivi3g03324 655 SMART ANK_2a 246 275 IPR002110 GO:0005515
Vivi3g03324 655 SMART ANK_2a 328 359 IPR002110 GO:0005515
Vivi3g03324 655 SMART ANK_2a 19 48 IPR002110 GO:0005515
Vivi3g03324 655 Pfam Ankyrin repeats (3 copies) 185 268 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03324 Vivi-Chr3 56124366 56126721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03324 184 395 Miscellaneous Gene Families AT1G07710 28.571 1.16e-14 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03324 - - gmx:100796359 825.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g03324 3 56124366 56126721 Vivi3g03324 3 56124366 56126721 ECH
Vivi3g03324 3 56124366 56126721 Vivi5g04653 5 145178066 145185298 PCT