Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00428 ATGCCTCCCTACTTGCCTCTTCGTTGGGAGAGCACAGGAGAACAATGGTGGTATGCATCTCCCATCGATTGCGCGGCCGCGAATGGCCACTATGATCTGGTGGTGGAGCTTCTCCACCTCGACACCAACCTTCTCATCAAGCTCACTTCCCTCCGCAGAATTCAGCGCCTCGAGACCGTGTGGGACGACGAGAAACACTTCGAGGACGTCGCGAAATGTCGCTCGCAGGTTGCCAGGAATCTCATGCTGGAACGCGAGACAGGAAGAGGACACAACTCTCTCATTCGCGCCGGCTACGGTGGGTGGCTTCTCTACACTGCTGCCTCAGCCGGTGACGTGGATTTCGTTAAGGAACTGTTGGGGAGGTACCCTGCGCTCGTGTTTGGAGAAGGAGAGTATGGTGTCACTGATATACTCTATGCTGCGGCGAGGAGCAATAATTCTCAAGTGTTTGAGCTTCTGCTTCGTTCTGCTCTCTCGCCACCGCAAATGGAGGAGGTTTACCAGAGGGACATGATGAATAGGGCGGTTCATGCTGCTGCCAGAGGAGGCAACTGGGAGATGCTGAAACAGCTTGTGAGGAACGGTTCTGGCGTTTTGGGGTTTAGAGATTCTCAAGGATGCACTGTCTTGCATACTGCAGCTGGTAGAGGCCAAGTTGAGGTGGTGAGAAATCTACTTGCATCATTTGATGTTGTAAACTTAACAGATGATCAAGGGAACACAGCATTACATATAGCTTCTTACGGGGGTCACTTACCAGTGGTTGAGATTCTGATTCTTGCATCCCCCTCGCTAGCATTGTTAACGAATCACTATGGAGATACTTTTCTTCATATGGCGGTGGCTGGTTTCAGAAGTCCTGGTTTCCGTAGACTGGACAAGCATACTGAGCTGATGAGGCAATTGGTAAGTGGAAAGATTGTGAACTTACAGGACATTATCAATGTTAAGAACAATGATGGAAGAACAGCTCTTCATGTATCCGTGATTGATAATATTCAATGTGAGCTAGTGGAATTGTTGATGTGTGTGCCATCAATTGATTTGAACATTTGTGATGCTGATGGGATGACCCCTTTGGATCTTTTAAAACAAAGGCCACGATCAGCATCATCTGATATTTTAATCAAGCAGATGATTTCCGCTGGAGGGGTCTCTAAATGTCAGGATGCTGATGCTGTGTCAGGAAATGCTGCCCTTTGCACTCATCACAAAGCTCATGTCATTGGAGGCAGTCCTGGGACTTCATTTAGAATACCAGATGCAGAGATATTCTTGTACACTGGCATTGAGAATTCATCAGATGCCACCAATTATGATCAAGCAAGTGTGGAATCATATTCCTGCTCAAACGAACTAAGCAATTCTGACTCGGCCAATTCCCCACATAACAGGAAGTCTAATTCTGTCAACGTAAGGCGCTCAAAGTTTCGTCTCCACTGGCCTAGGAGAAGAGAGACAAAAACAGTTGCCTCAGAATTGGAAGATGATGATTCTCTTGATCCTTTCAGTTCAAGTAGAAACTTGGAAGAGTTTCCAATACCATTGCGGCAAAGATACTCACAACCATGCTCCCTTCCAAACAACAAAAGAACACAATCTATGAGAACTTCTCTTCCAAGTCCATCCTCCAAAGTGAAATTCAGTGCTGGCCTAATGCAAGATGTAATTCAGCTAAAGCCACATTCTGCTCATTCAACTCCTAGTCCTTTCCAAGAGTTATCCGTGGCTTCTCTTTCTTACATCAAGAAACAAAAGGGTGTTGATATAATGGGACCCTCTTGCTCTAATCGATCAATAGATGACGGCACACTTCTATTGAACTACAAACAGTGTTCCTTCAATAAGAAATTAATGAATGGGTATTTTTCTTTTGGAGCACAGGGCCTGGCTGTCGAAGATTCCAATAGCTGCGCAAAGTCAAACAGCAGTTACAAACGTTTAAGTTCCATAGTTGCCTAA 1965 0.4585 MPPYLPLRWESTGEQWWYASPIDCAAANGHYDLVVELLHLDTNLLIKLTSLRRIQRLETVWDDEKHFEDVAKCRSQVARNLMLERETGRGHNSLIRAGYGGWLLYTAASAGDVDFVKELLGRYPALVFGEGEYGVTDILYAAARSNNSQVFELLLRSALSPPQMEEVYQRDMMNRAVHAAARGGNWEMLKQLVRNGSGVLGFRDSQGCTVLHTAAGRGQVEVVRNLLASFDVVNLTDDQGNTALHIASYGGHLPVVEILILASPSLALLTNHYGDTFLHMAVAGFRSPGFRRLDKHTELMRQLVSGKIVNLQDIINVKNNDGRTALHVSVIDNIQCELVELLMCVPSIDLNICDADGMTPLDLLKQRPRSASSDILIKQMISAGGVSKCQDADAVSGNAALCTHHKAHVIGGSPGTSFRIPDAEIFLYTGIENSSDATNYDQASVESYSCSNELSNSDSANSPHNRKSNSVNVRRSKFRLHWPRRRETKTVASELEDDDSLDPFSSSRNLEEFPIPLRQRYSQPCSLPNNKRTQSMRTSLPSPSSKVKFSAGLMQDVIQLKPHSAHSTPSPFQELSVASLSYIKKQKGVDIMGPSCSNRSIDDGTLLLNYKQCSFNKKLMNGYFSFGAQGLAVEDSNSCAKSNSSYKRLSSIVA 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00428 654 ProSiteProfiles Ankyrin repeat profile. 206 238 IPR002110 GO:0005515
Pumo1g00428 654 MobiDBLite consensus disorder prediction 451 472 - -
Pumo1g00428 654 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 20 247 - -
Pumo1g00428 654 ProSiteProfiles Ankyrin repeat region circular profile. 239 260 - -
Pumo1g00428 654 MobiDBLite consensus disorder prediction 521 545 - -
Pumo1g00428 654 ProSiteProfiles Ankyrin repeat region circular profile. 206 227 - -
Pumo1g00428 654 MobiDBLite consensus disorder prediction 451 469 - -
Pumo1g00428 654 MobiDBLite consensus disorder prediction 522 545 - -
Pumo1g00428 654 Pfam Ankyrin repeats (3 copies) 178 260 IPR002110 GO:0005515
Pumo1g00428 654 ProSiteProfiles Ankyrin repeat profile. 239 271 IPR002110 GO:0005515
Pumo1g00428 654 SUPERFAMILY Ankyrin repeat 21 378 IPR036770 -
Pumo1g00428 654 MobiDBLite consensus disorder prediction 489 508 - -
Pumo1g00428 654 SMART ANK_2a 321 352 IPR002110 GO:0005515
Pumo1g00428 654 SMART ANK_2a 99 128 IPR002110 GO:0005515
Pumo1g00428 654 SMART ANK_2a 206 235 IPR002110 GO:0005515
Pumo1g00428 654 SMART ANK_2a 172 202 IPR002110 GO:0005515
Pumo1g00428 654 SMART ANK_2a 17 46 IPR002110 GO:0005515
Pumo1g00428 654 SMART ANK_2a 273 313 IPR002110 GO:0005515
Pumo1g00428 654 SMART ANK_2a 133 163 IPR002110 GO:0005515
Pumo1g00428 654 SMART ANK_2a 239 268 IPR002110 GO:0005515
Pumo1g00428 654 Gene3D - 13 395 IPR036770 -
Pumo1g00428 654 MobiDBLite consensus disorder prediction 489 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00428 Pumo-Chr1 5953669 5957141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00428 104 363 Miscellaneous Gene Families AT2G31820 31.203 5.34e-21 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00428 - - gmx:100796359 1213.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00428 1 5953669 5957141 Pumo1g00428 1 5953669 5957141 ECH
Pumo1g00428 1 5953669 5957141 Pumo6g01284 6 17022921 17026692 PCT