Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1334 ATGCCACCCTCATATTTCCCTCTTCGGTGGGAGAGCACTGGAGACCAGTGGTGGTACGCTTCACCAATTGATTGGGCAGCTGCAAACGGCCACTATGATCTTGTGAGGGAGCTTCTCCACCTCGACACCAACCTCCTCATCAAGCTCACCTCTCTAAGGCGAATTCGCCGCTTGGAAACAGTGTGGGATGATGAAGAACAGTTCGATGATGTTGCCAGATGCCGCTCTCAAGTTGCCCGGAAGTTACTCCGGGAATGCCAGACCAAGAGAGGACACAACTCTCTCATTAGAGCAGGCTATGGTGGATGGCTTCTGTACACTGCTGCCTCAGCGGGGGATGTGGGTTTTGTGAAGGAATTGCTCCAGAGAGACCCTCTGCTTGTGTTTGGAGAAGGAGAATATGGTGTCACTGACATATTTTATGCTGCGGCCAGGAGCAAGAACTCTGAGGTTTTCAGGCTGCTGCTTGATTTTTCAATCTCACCGGGGTGTTTTAGGAGCAGTGGAGAGGAATTGGATGAGCAATCGGATGAAGTTTCTCCAGAATTTAGGTGGGAGATGAGGAATAGGGCTGTTCATGCTGCAGCTAGAGGGGGAAATTTGGAGATTCTGAAGGAGCTCCTTCATGATTGTACTGATGTTCTGGTTTATAGAGATATGCAGGGGTCTACAATCTTACATACAGCCTCTGGAAGAGGACAGGTTGAGATAGTTAAGGGCCTACTGGAATCCTATGACATTATCAACTCTACAGACAATCAGGGGAACACAGCATTGAATGTGGCTGCTTACAGGGGTTACTTAACTGTGCTAGAGGTTCTAATTCTTGCATCTCCCTCTTCAATCTTTTTGACAAACAATTATGGGGACACTTTACTCCACATGGCAGTGGCTGGTTTTCGAAGCCCGGGTTTCAGGAGACTGGACCGGCAGATTGAGCTCATGAAGCAGTTGCTACGTGGGAAGATTGTGAACATGGAAGACATCATCAATGCCAAGAACAATGATGGAAGAACTGCTCTTCACATGGCTGTAATTGGGAACATTCAGTCAGATGTGGTGGAATTGCTGATGACAGTGCCATCAATTAATTTGAACATCCGGGATGCTGATGGTATGACTCCTCTAGATCTCCTCAAGCAACGCCCACAATCAGCTTCTTCTGAAATCTTAATCAAGGAGTTAATTTCAGCTGGAGGGATAGCCAATTGTCAGGATTATATGGCAAGAAGTGCCCTTGTTTCCCACCTGAAAATGAAGGGTATTGGGAGCAGCCCGGGGACTTCTTTCAGAATCTCAGATGCAGAAATATTGTTGTACTCTGGTATTGAGAATGCGTCCAATGCCAGCCCTGATCCTGCAAGTGGAGAGCTCAGTTCATGGTCCAGTGAACTTGATCACCTTGACCCTGCAACAGATATCAACTTGGCTGATGATAATAAAGGCTCTGTAAATAATGCTGCAAGGCGCTTGAAGATCCTTCTCCACTGGCCCAGAAAGCAAGGAAAAGCTGACAGCAAAACATTGGGAGAAGATGATTCTTTGGACTCATACAAGATATCTAGAAATCTAGAAGATGATCCGACCCCTCTTCGACACAGATTCTCAAAACTCACATCTCTCCCAAACAATAAAAGAGTAGTCTCTTTCAGGAGCTTACTCCCAAGCCCTTCAACCAAGAAGAAATTTGCAGTAGGCCTAATGCATGGTGTGATCCGCGCAATGCCCCAATTAGCAGACCCAGCTGAATCATCTTCACCTCCTTTTTCAGAATCGCCTGTGTCATCACCTAGATCTGCAGAGAAGCAGAAGGGCATAGCTATTGAGAATGGCACTACTGGACCCTCTACCTCAAATCAGGGGGTGAAGGGTGGAAAACGAGAAATGAATAACAAACAAAGTTCCTTCAACAAGAAGATGATGAACCAATACTTCTGCTTCGGAGCACAAGGCATAGCCGTGGAGAATTCGATTCGCAGCCAGAGTTACAGGCATGCAGTTGTTTGA 2007 0.4674 MPPSYFPLRWESTGDQWWYASPIDWAAANGHYDLVRELLHLDTNLLIKLTSLRRIRRLETVWDDEEQFDDVARCRSQVARKLLRECQTKRGHNSLIRAGYGGWLLYTAASAGDVGFVKELLQRDPLLVFGEGEYGVTDIFYAAARSKNSEVFRLLLDFSISPGCFRSSGEELDEQSDEVSPEFRWEMRNRAVHAAARGGNLEILKELLHDCTDVLVYRDMQGSTILHTASGRGQVEIVKGLLESYDIINSTDNQGNTALNVAAYRGYLTVLEVLILASPSSIFLTNNYGDTLLHMAVAGFRSPGFRRLDRQIELMKQLLRGKIVNMEDIINAKNNDGRTALHMAVIGNIQSDVVELLMTVPSINLNIRDADGMTPLDLLKQRPQSASSEILIKELISAGGIANCQDYMARSALVSHLKMKGIGSSPGTSFRISDAEILLYSGIENASNASPDPASGELSSWSSELDHLDPATDINLADDNKGSVNNAARRLKILLHWPRKQGKADSKTLGEDDSLDSYKISRNLEDDPTPLRHRFSKLTSLPNNKRVVSFRSLLPSPSTKKKFAVGLMHGVIRAMPQLADPAESSSPPFSESPVSSPRSAEKQKGIAIENGTTGPSTSNQGVKGGKREMNNKQSSFNKKMMNQYFCFGAQGIAVENSIRSQSYRHAVV* 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1334 668 SMART ANK_2a 254 284 IPR002110 GO:0005515
Vvi1g1334 668 SMART ANK_2a 221 250 IPR002110 GO:0005515
Vvi1g1334 668 SMART ANK_2a 336 367 IPR002110 GO:0005515
Vvi1g1334 668 SMART ANK_2a 18 47 IPR002110 GO:0005515
Vvi1g1334 668 SMART ANK_2a 134 164 IPR002110 GO:0005515
Vvi1g1334 668 SMART ANK_2a 100 129 IPR002110 GO:0005515
Vvi1g1334 668 SMART ANK_2a 187 216 IPR002110 GO:0005515
Vvi1g1334 668 SMART ANK_2a 371 404 IPR002110 GO:0005515
Vvi1g1334 668 SMART ANK_2a 288 328 IPR002110 GO:0005515
Vvi1g1334 668 SUPERFAMILY Ankyrin repeat 22 392 IPR036770 -
Vvi1g1334 668 Gene3D - 13 419 IPR036770 -
Vvi1g1334 668 PANTHER ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED 4 414 - -
Vvi1g1334 668 Pfam Ankyrin repeats (3 copies) 193 275 IPR002110 GO:0005515
Vvi1g1334 668 Pfam Ankyrin repeat 336 369 IPR002110 GO:0005515
Vvi1g1334 668 ProSiteProfiles Ankyrin repeat profile. 221 253 IPR002110 GO:0005515
Vvi1g1334 668 MobiDBLite consensus disorder prediction 583 599 - -
Vvi1g1334 668 MobiDBLite consensus disorder prediction 609 630 - -
Vvi1g1334 668 MobiDBLite consensus disorder prediction 579 630 - -
Vvi1g1334 668 ProSiteProfiles Ankyrin repeat region circular profile. 221 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1334 Vvi-Chr1 19566166 19569048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1334 105 378 Miscellaneous Gene Families AT2G31820 31.071 4.46e-20 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1334 - - vvi:100242500 1311.21