Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0931 ATGACATCTAAGAAGATTAAGATTGGAATCAACGGATTTGGAAGGATTGGGCGTTTGGTTGCGAGAGTTGCTCTTCAGAGGGACGATGTTGAGCTGGTTGCAGTAAACGATCCTTTCATTTCCACTGATTACATGACATACATGTTCAAGTATGACACAGTTCATGGCCAGTGGAAGCATTTTGATATCAAGGTCAAGGACTCTAACACCCTTCTCTTTGGTCAAAACCCAGTTACCGTTTTCGGATTCAGGAACCCTGAGGAGATTCCATGGGGTGAAGCTGGTGCTGACTATGTTATTGAGTCAACCGGTGTGTTCACTGATAAGGACAAAGCCGCGGCACACTTGAAGGGTGGTGCAAAGAAGGTTGTGATCTCAGCCCCAAGTAAAGACGCACCAATGTTTGTTGTTGGTGTTAACGAGCATGAATACAAACCTGAACTTAACATTGTTTCCAACGCCAGCTGCACTACCAATTGTCTTGCTCCCCTCGCCAAGGTTATCAATGACCGATTTGGAATTGTTGAGGGTCTTATGACCACTGTCCACGCCATTACAGCTACTCAGAAGACCGTTGATGGTCCATCAAACAAGGATTGGAGGGGTGGAAGAGCTGCTTCCTTCAACATAATTCCCAGCAGCACTGGTGCTGCCAAGGCTGTGGGAAAAGTTCTTCCATCACTGAATGGTAAATTGACCGGAATGTCCTTCAGAGTTCCTACTGTGGATGTCTCAGTTGTTGATCTCACTGTCAGGCTAGAGAAGAAGGCAACCTATGCTGAGATCAAGAATGCTATCAAGGAGGAATCAGAAGGAAAATTGAAGGGTATTTTGGGTTACACCGAAGATGATGTTGTGTCCACTGACTTTCTTGGAGACAGCAGGTCAAGCATATTTGATGCTAAGGCTGGAATTGCTTTGAATGAGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAATGGGGTTACAGCTCCCGTGTGATTGACTTAATCGTGCACATTGCATCCGTGGCTTGA 1020 0.4549 MTSKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDTVHGQWKHFDIKVKDSNTLLFGQNPVTVFGFRNPEEIPWGEAGADYVIESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHAITATQKTVDGPSNKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMSFRVPTVDVSVVDLTVRLEKKATYAEIKNAIKEESEGKLKGILGYTEDDVVSTDFLGDSRSSIFDAKAGIALNENFVKLVSWYDNEWGYSSRVIDLIVHIASVA* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0931 339 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 6 109 IPR020828 GO:0051287
Amo20g0931 339 Gene3D Dihydrodipicolinate Reductase; domain 2 155 320 - -
Amo20g0931 339 TIGRFAM GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 7 330 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
Amo20g0931 339 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 154 161 IPR020830 GO:0016620
Amo20g0931 339 PIRSF GAPDH 4 339 IPR020831 GO:0016620
Amo20g0931 339 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 161 318 IPR020829 GO:0016620
Amo20g0931 339 Gene3D - 6 333 - -
Amo20g0931 339 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 155 318 - -
Amo20g0931 339 SMART gp_dh_n_7 6 156 IPR020828 GO:0051287
Amo20g0931 339 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 5 172 IPR036291 -
Amo20g0931 339 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 150 168 IPR020831 GO:0016620
Amo20g0931 339 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 115 128 IPR020831 GO:0016620
Amo20g0931 339 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 234 251 IPR020831 GO:0016620
Amo20g0931 339 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 274 289 IPR020831 GO:0016620
Amo20g0931 339 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 177 193 IPR020831 GO:0016620
Amo20g0931 339 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 3 336 IPR020831 GO:0016620
Amo20g0931 339 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 3 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0931 Amo-Chr20 15509190 15512789 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0931 K00134 - gmx:100782924 624.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0931 20 15509190 15512789 Amo20g0931 20 15509190 15512789 ECH
Amo20g0931 20 15509190 15512789 Amo10g0508 10 5127309 5130316 hybridization