Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05080 ATGGTTGGAGCTGGTGTTCTTGGTCTCCCCTATGCTATGTCACAACTTGGATGGGGTCCAGGTGTGACTTTACTTATCATTTCATGGATCATCACACTATACACATTGTGGCAAATGGTTGAGATGCATGAAATGGTTCCGGGAAAACGTTTTGATAGATATCATGAATTAGGTCAACATGCATTTGGAGAAAAGTTAGGTCTTTATATTGTGGTGCCTCAACAAGTTGTAGTAATGCTTGGTGGAACTATTGTTTACATGGTAACCGGGGGTGCATCATTGCAGAAGTTCCATGATACAGTTTGTCCAAATTGCAAAAAAATTAAATTAACCTTTTTCATTATGATATTTGCCTCTGTTCATTTTGTATTGTCTCATCTACCTAGCTTCAACTCCATTTCTGGTGTATCTCTGATTGCAGCAGTCATGTCTATTGGTTATTCTACAATTGCTTGGACTGCTAGTGCGCATAAAGGAATACAAGAAAATGTCAAATATAATAACAAAGCTAAAACTAGAATAGATTTTATCTTTAATTTCTTCAACGCGGTTGGTGCAGTTGCTTTTGCTTATGCTGGACACAGTGTGGTGTTGGAAATTCAAGCGACAATTCCATCAACACCTGAAAAACCATCCAAGGTTTCAATGTGGAGAGGAGTTGTTGTTTCCTATATTGTTGTTGCTTTTTGTTATTGGCCAGTTGCTATTATTGGTTATTGGATGTTTGGTAATGAGGTTAAGGATAATATTCTCATCTCTTTAGAGAAACCAACTTGGATCATTGCAATGGCTAACCTATTTGTTGTTTTCCATGTAATAGGAAGTTATCAGGTTTTTGCCATGCCAATGTTTGATATGCTTGAAAGTGTGCTTGTGAAGAAATTGAATTTTGAGCCGAGTGCAATCCTTCGCTTTGTTGTGCGTAATGTATATGTTGCATTCACAATGTTTATTGCCATTACTTTTCCATTTTTCGGTGGTCTATTAGGATTTGTTGGAGGATTTGCTGTCACTCCAACAGCATATTTTCTTCCATGTATCATATGGCTTAAAATCTATAAACCAAAGAGATTCAGCTTGTCTTGGTATATTAATTGGATATGCATTGTATTTGGCCTATGTATAATTATTTTAGCACCTATTGGAGCATTGAGGAGTATTATCCTTGAAGCCAAGACCTATAAATTTTACACATAA 1197 0.3642 MVGAGVLGLPYAMSQLGWGPGVTLLIISWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQVVVMLGGTIVYMVTGGASLQKFHDTVCPNCKKIKLTFFIMIFASVHFVLSHLPSFNSISGVSLIAAVMSIGYSTIAWTASAHKGIQENVKYNNKAKTRIDFIFNFFNAVGAVAFAYAGHSVVLEIQATIPSTPEKPSKVSMWRGVVVSYIVVAFCYWPVAIIGYWMFGNEVKDNILISLEKPTWIIAMANLFVVFHVIGSYQVFAMPMFDMLESVLVKKLNFEPSAILRFVVRNVYVAFTMFIAITFPFFGGLLGFVGGFAVTPTAYFLPCIIWLKIYKPKRFSLSWYINWICIVFGLCIIILAPIGALRSIILEAKTYKFYT 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05080 398 FunFam Lysine histidine transporter 1 1 393 - -
Vifa1g05080 398 Pfam Transmembrane amino acid transporter protein 1 382 IPR013057 -
Vifa1g05080 398 PANTHER OS05G0424000 PROTEIN-RELATED 2 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05080 Vifa-Chr1 792629888 792632342 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05080 1 398 Organic Solute Cotransporters AT5G40780 74.623 0.0 639
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05080 K26385 - gmx:100804680 662.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g05080 1 792629888 792632342 Vifa1g05080 1 792629888 792632342 ECH