Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1310 ATGGCATCGGACAAGAAGATCAAGATAGGAATCAATGGATTTGGAAGGATTGGCCGATTGGTGGCCAGGGTGGCTCTTCTAAGAGACGATGTTGAGCTCGTTGCAGTCAACGATCCTTTCATCAGCACTGAATATATGACATACATGTTTAAGTATGATACTGTTCATGGGGCGTGGAAGCACTTTGATGTCAAGGTGAAGGACTCTAAGACCCTTCTCTTTGGAGAGAAGTCCGTCACTGTTTTCGGACTCATGAACCCTGAGGAGATCCCATGGGCTGAGGCCGGTGCTGAATATGTTGTTGAGTCAACTGGTGTCTTCACAGACAAAGAAAAGGCTGCTGCCCACTTAAAGGGTGGTGCTAAGAAGGTTGTCATTTCTGCCCCAAGCAAAGATGCACCCATGTTTGTTGTCGGAGTTAACGAGAAGGAATACAAGCCGGAGCTTAACATTGTTTCCAATGCTAGCTGCACTACCAATTGCCTTGCTCCCCTCGCCAAGGTTATCAACGATAGATTTGGAATTGTTGAGGGTCTCATGACCACTGTCCATGCCATCACTGCCACTCAAAAGACTGTTGATGGTCCATCAAACAAGGACTGGAGGGGTGGAAGAGCTGCTTCCTTCAACATTATTCCCACCAGCACTGGAGCTGCCAAGGCAGTTGGAAAAGTTCTGCCCCAGCTTAATGGCAAATTGACAGGAATGTCAAGCATATTTGACGCTAAGGCTGGAATTGCTTTGAATGAGAACTTTGTTAAGCTTGTTTCTTGGTATGACAATGAGTGGGGTTACAGTACCCGCGTGATTGATTTGATTGCCCACATTGCATCTGTTGCTTAA 843 0.465 MASDKKIKIGINGFGRIGRLVARVALLRDDVELVAVNDPFISTEYMTYMFKYDTVHGAWKHFDVKVKDSKTLLFGEKSVTVFGLMNPEEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELNIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHAITATQKTVDGPSNKDWRGGRAASFNIIPTSTGAAKAVGKVLPQLNGKLTGMSSIFDAKAGIALNENFVKLVSWYDNEWGYSTRVIDLIAHIASVA 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1310 280 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 237 277 IPR020831 GO:0016620
Lele22g1310 280 Gene3D - 7 155 - -
Lele22g1310 280 Gene3D - 262 276 - -
Lele22g1310 280 Gene3D Dihydrodipicolinate Reductase; domain 2 156 237 - -
Lele22g1310 280 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 116 129 IPR020831 GO:0016620
Lele22g1310 280 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 151 169 IPR020831 GO:0016620
Lele22g1310 280 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 178 194 IPR020831 GO:0016620
Lele22g1310 280 Gene3D Dihydrodipicolinate Reductase; domain 2 238 261 - -
Lele22g1310 280 FunFam Glyceraldehyde-3-phosphate dehydrogenase 7 167 - -
Lele22g1310 280 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 156 259 - -
Lele22g1310 280 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 155 162 IPR020830 GO:0016620
Lele22g1310 280 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 7 110 IPR020828 GO:0051287
Lele22g1310 280 SMART gp_dh_n_7 7 157 IPR020828 GO:0051287
Lele22g1310 280 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 173 IPR036291 -
Lele22g1310 280 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 162 237 IPR020829 GO:0016620
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1310 Lele-ChrLele22 18585362 18587754 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g1310 22 18585362 18587754 Lele22g1310 22 18585362 18587754 ECH
Lele22g1310 22 18585362 18587754 Lele23g0718 23 5753042 5755397 hybridization
Lele22g1310 22 18585362 18587754 Lele24g1225 24 16220300 16222684 hybridization