Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01541 ATGTCTCCTTCACTGTTGCCTCTTCGCTGGGAGAGCACCGGAGAACAGTGGTGGTACGCTTCTCCGATCGATTGCGCCGCCGCGAACGGCCACTACGATCTGGTGGTGGAACTTCTCCACCTCGACGCCAACCTCCTCATTAAGCTCACTTCCCTCCGCAGAATTCGGCGCCTCGAAACAGTGTGGGACGACGAGGAACACTTCGAGGACGTCGCGAAATGTCGCTCGCAGGTTGCGAGGAGCCTCATGCTGGAATGCGAGACGGGAAGAGGAACCAACTCTCTCATTCGCGCCGGGTACGGCGGGTGGCTCCTCTACACCGCCGCCTCTGCCGGTGACGTGGATTTCGTCCGGGAACTATTGGGGAGGAACCCTGCGCTTGTGTTGGGAGAAGGAGAGTATGGAGTGACTGATATACTGTATGCTGCTGCGAGGAGCAATAGCTGTGAGGTGTTTGAGGTTGTCCTTCGTTCTGCTCTCTCGCCGCCGGCGCAGATGGAAGAGGTTTACGAGAGGGATATGACGAATAGGGCGGTTCATGCTGCTGCGAGAGGAGGGAACTGGGAGATGCTGAAACAGCTTGTGGAAGAGGGTTGTGGCGTTTTGGGGTTTAGAGATGCTCAAGGTTGCACCGTTTTGCATACTGCAGCTGCCAGAGGACAGGTTCAGGTGGTGAGAAATCTACTTGCATCATTCGATGTTGTAAACTTAACAGATGATCAAGGGAACACAGCGTTACATGTAGCATCTTACGGGGGTCACTTATCTGTGGTGGAGATTCTGATTCTTGCATCCCCTTCATTAGCATTGTTAACCAACCACTATGGAGATACTTTTCTTCATATGGCAGTGGCTGGTTTCAGAAGTCCCGGTTTCCGTAGACTGGACAAACATGCTGAACTCTTGAAGCAATTGGTTTGTGGAAAGATTGTGAACTTACAGAACATCATCAATGTCAAGAACAATGATGGAAGAACGGTTCTTCATGTATCAGTGGTTGATAATGTTCAATGCGAGCTAGTGGAACTGTTGATGTCTGTGCCATCAATTGATCTGAACATTTGTGATGCTGATGGGATGACCCCTTTGGATCTTCTTAAACAAAGACCAAAATCAGCATCTTCTGATATATTAATCAAGATGATAATTTCCTCTGGAGGGGTCTCTAATGGTCGAAATGCTATAGCAGAAAATGCACTTTGCACTCATCACAAAGCTCATGTCATTGGAGGAAGTCCTGGCACCTCGTTTAGAATACCAGATGCTGAGATATTCCTGTACACTGGAATTGAGAATTCATCAGATGCTAATTATGATCAAGCAAGTGTGGAATCGTATTCCTGCTCAAACGAACCAAGCAATTCTGACTCGGGAAATTCTCCACACAACAAGAAGTATGATAATTCTTCTAATCGTGCTGTAAGGCGTTCGAAGTTTCGTCTCAGGTGGCCTAAAAGAAAAGAGACAAAAGCAGCTGCATCAGAATTAGAAGATGACGATTCTCTTGATCCTTTTAGTTCAAGTAGAAACTTGGAAGATTTTCCAATTCCATTGCGGCAAAGATACTCGCAACCATGCTCCCTTCCAAACAGCAAAAGAACAACTTCTCTTCCAAGTCCAACCTCCAAAGTCAAATTCAGTGCTGGTCTGATGCAAGCTGTGATTCAAGCAAAACCACATTTTTCTCATTCAACTCCAAGTCCTTTCCAAGAATTATCTGTGGCTTCTCTTTCTTCCATCAAGAAACAAAAGGGTACTGATATAAAGGGACCCTCTTGCTCTAATCCACCATTGGAGGACAGAGAACTTCTGTTGAACTACAAACATTGCTCCCTCAATAAAAAGTTGATGAATGGATATCTTTCTTTTGGGGCACAAGGCCTGGCTGTTGAAAATTCCAATAGCTGCTCAAAGTCAAACAGGAGTTACAAGCGTTTGAGTTCCATAGTTGCCTGA 1956 0.4652 MSPSLLPLRWESTGEQWWYASPIDCAAANGHYDLVVELLHLDANLLIKLTSLRRIRRLETVWDDEEHFEDVAKCRSQVARSLMLECETGRGTNSLIRAGYGGWLLYTAASAGDVDFVRELLGRNPALVLGEGEYGVTDILYAAARSNSCEVFEVVLRSALSPPAQMEEVYERDMTNRAVHAAARGGNWEMLKQLVEEGCGVLGFRDAQGCTVLHTAAARGQVQVVRNLLASFDVVNLTDDQGNTALHVASYGGHLSVVEILILASPSLALLTNHYGDTFLHMAVAGFRSPGFRRLDKHAELLKQLVCGKIVNLQNIINVKNNDGRTVLHVSVVDNVQCELVELLMSVPSIDLNICDADGMTPLDLLKQRPKSASSDILIKMIISSGGVSNGRNAIAENALCTHHKAHVIGGSPGTSFRIPDAEIFLYTGIENSSDANYDQASVESYSCSNEPSNSDSGNSPHNKKYDNSSNRAVRRSKFRLRWPKRKETKAAASELEDDDSLDPFSSSRNLEDFPIPLRQRYSQPCSLPNSKRTTSLPSPTSKVKFSAGLMQAVIQAKPHFSHSTPSPFQELSVASLSSIKKQKGTDIKGPSCSNPPLEDRELLLNYKHCSLNKKLMNGYLSFGAQGLAVENSNSCSKSNRSYKRLSSIVA 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01541 651 MobiDBLite consensus disorder prediction 441 542 - -
Vimu6g01541 651 PANTHER ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED 6 463 - -
Vimu6g01541 651 MobiDBLite consensus disorder prediction 486 506 - -
Vimu6g01541 651 SUPERFAMILY Ankyrin repeat 104 378 IPR036770 -
Vimu6g01541 651 ProSiteProfiles Ankyrin repeat region circular profile. 208 229 - -
Vimu6g01541 651 SMART ANK_2a 275 315 IPR002110 GO:0005515
Vimu6g01541 651 SMART ANK_2a 18 47 IPR002110 GO:0005515
Vimu6g01541 651 SMART ANK_2a 174 204 IPR002110 GO:0005515
Vimu6g01541 651 SMART ANK_2a 241 270 IPR002110 GO:0005515
Vimu6g01541 651 SMART ANK_2a 134 164 IPR002110 GO:0005515
Vimu6g01541 651 SMART ANK_2a 100 129 IPR002110 GO:0005515
Vimu6g01541 651 SMART ANK_2a 208 237 IPR002110 GO:0005515
Vimu6g01541 651 SMART ANK_2a 323 354 IPR002110 GO:0005515
Vimu6g01541 651 ProSiteProfiles Ankyrin repeat region circular profile. 241 262 - -
Vimu6g01541 651 MobiDBLite consensus disorder prediction 523 542 - -
Vimu6g01541 651 MobiDBLite consensus disorder prediction 441 467 - -
Vimu6g01541 651 Gene3D - 13 405 IPR036770 -
Vimu6g01541 651 ProSiteProfiles Ankyrin repeat profile. 208 240 IPR002110 GO:0005515
Vimu6g01541 651 ProSiteProfiles Ankyrin repeat profile. 241 273 IPR002110 GO:0005515
Vimu6g01541 651 Pfam Ankyrin repeats (3 copies) 180 262 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01541 Vimu-Chr6 14438626 14442217 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01541 105 365 Miscellaneous Gene Families AT2G31820 32.331 1.12e-20 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01541 - - vun:114165357 1147.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01541 6 14438626 14442217 Vimu6g01541 6 14438626 14442217 ECH
Vimu6g01541 6 14438626 14442217 Vimu11g01819 11 25236941 25239529 PCT