Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g2912 ATGGTAATTGATTTTTTTCCTTCGATTGGTCGTTTGGTGGCTAGGGTCGCACTTCAACGGGACGATGTTGAGCTTGTTGCTGTTAACGATCCTTTCATCACTACTGACTACATGACGTACATGTTTAAGTACGACACCGTTCATGGTCAGTGGAAGCATTTTGATATCAAGGTGAAGGACTCTAAGACTCTTCTCTTTGGAGAGAAGTCCGTGGCCGTTTTCGGTTTCAGGAACCCTGAAGAGATCCCATGGGCTGAGGCTGGTGCTGACTATGTTGTTGAGTCCACTGGAGTCTTCACTGACAAGGAAAAGGCTGCTGCTCACTTGAAGGGAGGTGCTAAGAAGGTTGTCATTTCTGCCCCGAGCAAAGATGCACCTATGTTCGTTGTTGGTGTTAACGAGAAGGAATACAAGCCAGAGCTTGACATTGTTTCCAATGCTAGCTGCACTACCAATTGCCTTGCTCCTCTCGCCAAGGTTATCAACGATAGGTTTGGAATCGTCGAGGGTCTTATGACCACGGTTCACGCCATCACTGCCACTCAGAAGACTGTTGATGGTCCATCAAACAAGGACTGGAGGGGTGGAAGAGCTGCTTCCTTCAACATAATTCCTAGCAGCACTGGTGCAGCTAAGGCTGTTGGAAAAGTTCTTCCAGTGTTGAATGGCAAATTGACTGGAATGTCCTTCAGAGTCCCTACTGCTGATGTTTCAGTTGTTGACCTCACTGTCAGGCTGGAGAAGAAGGCAACCTATGAGCAGATCAAATCTGCTATCAAGGAGGAATCTGAGGGCAACCTGAAGGGAATTTTGGGTTACACTGAAGATGATGTTGTGTCTTCTGACTTCGTTGGTGACAGCAGATCAAGCATATTTGATGCCAAGGCTGGAATTGCTTTGAACGAAAACTTTGCAAAGCTAGTTGCGTGGTATGACAACGAATGGGGTTATAGTTCCCGTGTGATTGATTTGATCGTCCACATCGCATCCGTTGCTTAA 999 0.4665 MVIDFFPSIGRLVARVALQRDDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHFDIKVKDSKTLLFGEKSVAVFGFRNPEEIPWAEAGADYVVESTGVFTDKEKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHAITATQKTVDGPSNKDWRGGRAASFNIIPSSTGAAKAVGKVLPVLNGKLTGMSFRVPTADVSVVDLTVRLEKKATYEQIKSAIKEESEGNLKGILGYTEDDVVSSDFVGDSRSSIFDAKAGIALNENFAKLVAWYDNEWGYSSRVIDLIVHIASVA 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g2912 332 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 147 154 IPR020830 GO:0016620
Sto3g2912 332 Gene3D Dihydrodipicolinate Reductase; domain 2 148 313 - -
Sto3g2912 332 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 3 331 IPR020831 GO:0016620
Sto3g2912 332 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 169 IPR036291 -
Sto3g2912 332 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 6 102 IPR020828 GO:0051287
Sto3g2912 332 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 154 311 IPR020829 GO:0016620
Sto3g2912 332 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 108 121 IPR020831 GO:0016620
Sto3g2912 332 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 143 161 IPR020831 GO:0016620
Sto3g2912 332 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 170 186 IPR020831 GO:0016620
Sto3g2912 332 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 227 244 IPR020831 GO:0016620
Sto3g2912 332 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 267 282 IPR020831 GO:0016620
Sto3g2912 332 PIRSF GAPDH 2 332 IPR020831 GO:0016620
Sto3g2912 332 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 3 331 - -
Sto3g2912 332 Gene3D - 5 326 - -
Sto3g2912 332 SMART gp_dh_n_7 9 149 IPR020828 GO:0051287
Sto3g2912 332 TIGRFAM GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 5 323 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
Sto3g2912 332 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 148 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g2912 Sto-Chr3 33800349 33804026 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g2912 K00134 - gmx:100782924 598.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g2912 3 33800349 33804026 Sto3g2912 3 33800349 33804026 ECH
Sto3g2912 3 33800349 33804026 Sto3g1292 3 9342771 9346734 ECH