Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5547 ATGGCTTCTCCATCATGCTTCCCTCTTCGTTGGGAGAGCACAGGAAACCAGTGGTGGTATGCAGCCCCCATTGATTGGGCTGCAGCAAATGGCCTCTATGATCTTGTTGCTGAGCTTCTCCACCTTGACACCAACCTCCTCATCAAGCTCACTTCCCTCCGTAGAATTCGCCGCCTCGAAGCCGTTTGGGATGACGAGGCTAACTTTGAAGACGTTGCAAGTTGCCGCTCCAAGGTTGCAAGGAATCTCATGCTTGAATGTGAGAACGGAAGAAGGGAACACAAGTACAACTCCCTCATCCGTGCTGGCTATGGTGGATGGCTTCTCTACACTGCAGCCTCAGCAGGGGATGTGGAATTTGTGAAGGAATTGTTGAGGAGAGACCCTTTGCTTGTTTTTGGTGAGGGAGAGTATGGTGTCACTGACATACTCTATGCTGCTGCAAGGAGCAAGAATTGTGTGGTGTTCAGGCTCTTGCTTGATTCTGCACTCTCTGGGAGTGAAGAACATCATGGTGATGGTGGTGTTTTCAAGAGAGAGATGGTGAATAGAGCAATTCATGCTGCTGCAAGAGGAGGGAATTGGGAAATGCTGAAGGAGCTTGTGGAAAATGTTTCTGAGATTTTGTGCTACAGAGATTCTCAAGGGTGTACTGTCTTGCATTCAGCAGCTGGCAGAGGCCAAGTTGAGGTAGTGAGAAACTTAATTGAGTCATCTGATATTATCAACTCAACTGATGTACAAGGCAATACAGCATTACATGTGGCTTCTTACAGGGGTTACTTACCTGTGGTAGAGATTCTGGTTCAAGCATCACCCTCATTAGCATCCCTAACCAATCATTATGGAGATACTTTTCTTCACATGGCAGTGGCTGGTTTCAGAAGCCCTGGATTCCGAAGACTAGACAAGCACACTGAGCTCATGAACCAATTGATTAGTGGAAAGATTGTGGACATGCAGGACATCATAAATATCAAGAACAATGATGGAAGAACAGCTCTTCACGTAGCTGTGATTCATAACATCCAATGTGAAATAGTGGAATTACTGATGTCCATTCCATCAATTGATTTGAACGTCCGCGATGCGGATGGCATGACCCCCTTGGATCATTTGAAGCAGAGGTCGAAATCAGCATCATCTGAAATCTTGATCAAGCAGTTGATTTCAGCCGGTGGCATCTCTAATTGTCAGGATTATACAGCAAGAAATACTCTTGTTACTCATCTGAAGAATCATGGCATTGTAACAAGTCCTGGCATTTCATTCAGGGTACCGGATGGTGAGATATTCTTGTACACAGGCATTGAGAAATCCTATGATGACAATTTTGATCAGGCAAGTGTGGAGTCAAATTCATGGTCAAGCAGTGAACCGCATGATTACAAGCTAGCTGATTCTCCACATTGCAGCAAGTCTAGTCCTATCAACGATGCGAAAAGGCGCTTAAAGTTCCTTTTCGGGAGGCCTAGAGGAAGAGAGACTAAAAAGGCAGTATCAGAAATTCAAGATGACGATTCTGTGGCTTCTTCTTGCATCTCAAGTAAAGAGTTGGAAGACATTCCAATTCCATTAAGACAAAGATACTCAAAACTGTGTTCCCTTCCAAACAACAAGAGAACATTACCTATAATGACCAATCTCCCAAGTCCATCCAGTAGAAGTTATTTTGCTGCAGGCCTAATGCAAGGGGTAATTCAGGTAAAGCCATATGTGCCTATTGCTAATGCTGCTCATTCAACTCATAGTCTTCAAGAACATAAGGGTGTTGATATAGATTGTTGTACACCACAGTTGAACTTCAGGCAAGGTTCCTTCAATAAGAAAATGATGAATAAGTATTTTTCTTTTGGAGCACAAGAGCAGGCTTTTGAGGGTGCAAATAGCTGCACTAGGACAAATCTCAGTTCTTTAGTTACATAA 1926 0.4387 MASPSCFPLRWESTGNQWWYAAPIDWAAANGLYDLVAELLHLDTNLLIKLTSLRRIRRLEAVWDDEANFEDVASCRSKVARNLMLECENGRREHKYNSLIRAGYGGWLLYTAASAGDVEFVKELLRRDPLLVFGEGEYGVTDILYAAARSKNCVVFRLLLDSALSGSEEHHGDGGVFKREMVNRAIHAAARGGNWEMLKELVENVSEILCYRDSQGCTVLHSAAGRGQVEVVRNLIESSDIINSTDVQGNTALHVASYRGYLPVVEILVQASPSLASLTNHYGDTFLHMAVAGFRSPGFRRLDKHTELMNQLISGKIVDMQDIINIKNNDGRTALHVAVIHNIQCEIVELLMSIPSIDLNVRDADGMTPLDHLKQRSKSASSEILIKQLISAGGISNCQDYTARNTLVTHLKNHGIVTSPGISFRVPDGEIFLYTGIEKSYDDNFDQASVESNSWSSSEPHDYKLADSPHCSKSSPINDAKRRLKFLFGRPRGRETKKAVSEIQDDDSVASSCISSKELEDIPIPLRQRYSKLCSLPNNKRTLPIMTNLPSPSSRSYFAAGLMQGVIQVKPYVPIANAAHSTHSLQEHKGVDIDCCTPQLNFRQGSFNKKMMNKYFSFGAQEQAFEGANSCTRTNLSSLVT* 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5547 641 ProSiteProfiles Ankyrin repeat profile. 248 280 IPR002110 GO:0005515
Amo13g5547 641 PANTHER ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED 3 635 - -
Amo13g5547 641 Pfam Ankyrin repeats (3 copies) 144 240 IPR002110 GO:0005515
Amo13g5547 641 Pfam Ankyrin repeats (many copies) 242 290 IPR002110 GO:0005515
Amo13g5547 641 ProSiteProfiles Ankyrin repeat region circular profile. 215 246 - -
Amo13g5547 641 Gene3D - 14 416 IPR036770 -
Amo13g5547 641 Pfam Ankyrin repeat 330 363 IPR002110 GO:0005515
Amo13g5547 641 SUPERFAMILY Ankyrin repeat 108 386 IPR036770 -
Amo13g5547 641 ProSiteProfiles Ankyrin repeat profile. 215 247 IPR002110 GO:0005515
Amo13g5547 641 ProSiteProfiles Ankyrin repeat region circular profile. 248 270 - -
Amo13g5547 641 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 3 635 - -
Amo13g5547 641 SMART ANK_2a 330 361 IPR002110 GO:0005515
Amo13g5547 641 SMART ANK_2a 365 398 IPR002110 GO:0005515
Amo13g5547 641 SMART ANK_2a 19 48 IPR002110 GO:0005515
Amo13g5547 641 SMART ANK_2a 248 277 IPR002110 GO:0005515
Amo13g5547 641 SMART ANK_2a 104 133 IPR002110 GO:0005515
Amo13g5547 641 SMART ANK_2a 215 244 IPR002110 GO:0005515
Amo13g5547 641 SMART ANK_2a 181 210 IPR002110 GO:0005515
Amo13g5547 641 SMART ANK_2a 282 322 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5547 Amo-Chr13 156980871 156984335 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5547 81 371 Miscellaneous Gene Families AT1G07710 29.592 4.61e-21 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5547 - - gmx:100811195 880.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g5547 13 156980871 156984335 Amo13g5547 13 156980871 156984335 ECH