Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00427 ATGGCATCAGACAAGAAGATCAGGATCGGTATCAATGGTTTTGGAAGGATTGGCCGTTTGGTGGCCAGGGTTGCCCTTCAAAGGAATGATGTTGAACTCGTTGCTGTCAACGATCCTTTCATCACCACTGATTACATGACATACATGTTCAAGTACGACACCGTTCATGGCCAGTGGAAGCATTTTGATGTCAAGGTGAAGGACTCTAAGACCCTTCTCTTCGGTGAGAAGCCCGTCACTGTTTTTGGAATCAGGAACCCTGAAGAGATTCCATGGGGTGAAGCTGGTGCTGATTATGTTGTTGAGTCAACTGGTGTATTCACTGACAAGGACAAGGCTGCTGCTCACTTGAAGGGTGGTGCTAAGAAGGTTGTCATCTCTGCCCCAAGCAAAGATGCACCCATGTTTGTTGTTGGTGTTAACGAGAAGGACTACAAGCCAGAGCTTGACATTGTTTCCAATGCTAGCTGCACTACCAATTGCCTTGCTCCCCTCGCCAAGGTTATCAATGACCGATTTGGAATCGTGGAGGGTCTTATGACCACTGTTCACGCCATCACAGCTACTCAGAAGACTGTTGATGGTCCATCAAACAAGGACTGGAGGGGTGGAAGAGCTGCTTCCTTCAATATAATTCCCAGCAGCACTGGAGCTGCTAAGGCTGTAGGAAAAGTTCTTCCAGTACTGAATGGTAAATTGACTGGAATGTCCTTCCGAGTCCCCACTGTGGATGTTTCAGTTGTTGACCTCACTGTCAGGCTAGAGAAGCCAGCAACCTATGAGCAAATCAAAGCTGCTATCAAGGAGGAATCAGAGGGCAAATTGAAGGGTATTTTGGGTTACACTGAAGATGATGTGGTGTCTACTGATTTCGTTGGCGATAACAGGTCTAGGCATATTTGA 903 0.4695 MASDKKIRIGINGFGRIGRLVARVALQRNDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHFDVKVKDSKTLLFGEKPVTVFGIRNPEEIPWGEAGADYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKDYKPELDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHAITATQKTVDGPSNKDWRGGRAASFNIIPSSTGAAKAVGKVLPVLNGKLTGMSFRVPTVDVSVVDLTVRLEKPATYEQIKAAIKEESEGKLKGILGYTEDDVVSTDFVGDNRSRHI 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00427 300 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 173 IPR036291 -
Pumo1g00427 300 SMART gp_dh_n_7 7 157 IPR020828 GO:0051287
Pumo1g00427 300 Gene3D - 7 155 - -
Pumo1g00427 300 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 6 298 IPR020831 GO:0016620
Pumo1g00427 300 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 151 169 IPR020831 GO:0016620
Pumo1g00427 300 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 116 129 IPR020831 GO:0016620
Pumo1g00427 300 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 235 252 IPR020831 GO:0016620
Pumo1g00427 300 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 275 290 IPR020831 GO:0016620
Pumo1g00427 300 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 178 194 IPR020831 GO:0016620
Pumo1g00427 300 FunFam Glyceraldehyde-3-phosphate dehydrogenase 7 167 - -
Pumo1g00427 300 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 155 162 IPR020830 GO:0016620
Pumo1g00427 300 Gene3D Dihydrodipicolinate Reductase; domain 2 156 297 - -
Pumo1g00427 300 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 162 298 IPR020829 GO:0016620
Pumo1g00427 300 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 156 298 - -
Pumo1g00427 300 FunFam Glyceraldehyde-3-phosphate dehydrogenase 156 300 - -
Pumo1g00427 300 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 7 110 IPR020828 GO:0051287
Pumo1g00427 300 PIRSF GAPDH 5 300 IPR020831 GO:0016620
Pumo1g00427 300 NCBIfam glyceraldehyde-3-phosphate dehydrogenase, type I 8 298 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00427 Pumo-Chr1 5942339 5945231 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00427 K00134 - gmx:100782924 562.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00427 1 5942339 5945231 Pumo1g00427 1 5942339 5945231 ECH
Pumo1g00427 1 5942339 5945231 Pumo10g01908 10 25159466 25175376 ECH