Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1332 ATGACTTACATGTTCAAGTATGACAGTGTTCATGGCCACTGGAAGCATCATGATGTTAAGGTTAAGGATTCCAAGACACTTCTCTTTGGTGAGAAGTCTGTCACAGTTTTTGGTGTCAGGAACCCAGAAGAGATCCCATGGGCTGAGACCGGTGCTGACTATGTTGTGGAATCTACTGGAGTGTTCACTGACAAGGACAAGGCCGCTGCCCACTTGAAGGGTGGTGCAAAGAAGGTAATCATCTCTGCCCCCAGCAAAGATGCTCCCATGTTTGTTATGGGTGTCAATGAGAAGGAATACAAGCCCGATATCGACATTGTTTCCAATGCTAGCTGCACTACCAACTGTCTTGCTCCTCTGGCTAAGGTTATTAATGACAGATTTGGCATTGTTGAGGGTCTTATGACCACTGTTCACGCCATCACTGCCACACAGAAGACCGTTGATGGGCCATCAAGCAAGGACTGGAGAGGTGGAAGAGCTGCTTCCTTCAACATCATCCCCAGCAGCACTGGTGCTGCCAAGGCTGTTGGAAAGGTGCTGCCTGCACTGAATGGGAAGTTAACCGGCATGTCTTTCCGAGTTCCTACTGTGGATGTTTCAGTCGTGGACCTTACTGTTAGGCTTGAGAAATCGGCCACCTATGACGAGGTCAAAGCCGCTATCAAGGAGGAGTCTGAAGGCAAACTCAAGGGAATCCTGGGGTACACTGAAGATGATGTGGTGTCCACAGACTTCATTGGTGACAGCAGATCAAGCATCTTTGATGCCAAGGCTGGAATTGCCCTGAATGCCAATTTTTTGAAACTCGTCTCGTGGTATGACAACGAATGGGGTTACAGTTCACGGGTAATCGACTTGATCCGCCACATGGCTTCTGTTTAA 885 0.4847 MTYMFKYDSVHGHWKHHDVKVKDSKTLLFGEKSVTVFGVRNPEEIPWAETGADYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVMGVNEKEYKPDIDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHAITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKSATYDEVKAAIKEESEGKLKGILGYTEDDVVSTDFIGDSRSSIFDAKAGIALNANFLKLVSWYDNEWGYSSRVIDLIRHMASV* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1332 294 NCBIfam glyceraldehyde-3-phosphate dehydrogenase, type I 2 286 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
Vvi1g1332 294 FunFam Glyceraldehyde-3-phosphate dehydrogenase 1 127 - -
Vvi1g1332 294 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 117 274 IPR020829 GO:0016620
Vvi1g1332 294 SMART gp_dh_n_7 1 112 IPR020828 GO:0051287
Vvi1g1332 294 FunFam Glyceraldehyde-3-phosphate dehydrogenase 111 276 - -
Vvi1g1332 294 Gene3D - 1 289 - -
Vvi1g1332 294 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 1 65 IPR020828 GO:0051287
Vvi1g1332 294 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 111 274 - -
Vvi1g1332 294 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 133 149 IPR020831 GO:0016620
Vvi1g1332 294 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 190 207 IPR020831 GO:0016620
Vvi1g1332 294 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 106 124 IPR020831 GO:0016620
Vvi1g1332 294 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 230 245 IPR020831 GO:0016620
Vvi1g1332 294 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 71 84 IPR020831 GO:0016620
Vvi1g1332 294 Gene3D Dihydrodipicolinate Reductase; domain 2 111 276 - -
Vvi1g1332 294 PIRSF GAPDH 1 294 IPR020831 GO:0016620
Vvi1g1332 294 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 1 293 IPR020831 GO:0016620
Vvi1g1332 294 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1 128 IPR036291 -
Vvi1g1332 294 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 110 117 IPR020830 GO:0016620
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1332 Vvi-Chr1 19544341 19546424 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1332 K00134 - vvi:100264789 577.785