Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02265 ATGTCTCTTAGATATTTCCCTCTTAGGTGGGAGAGCACTGGGGATCAATGGTGGTATGCATCCCCAATAGACTGTGCTGCTGCTAATGGCCACTATGATTTGGTTCGTGAGCTTCTTCGAATTGACAACAACCACCTTTTCAAGCTCACATCCCTGCGCCGAATCCGTCGCCTTGAAGTTGTTTGGGATGATGAACAACAGTTCAATGGTGTTGCAAAGTGTCGTTCTGAGGTGGCCCAGAAGCTTCTTTTTGAGTGTGAATCCAAGAAAGGGAAGAACTCACTAATCCGTGCTGGATATGGTGGATGGCTAATGTACACTGCTGCATCAGCTGGTGACTTGGGTTTTGTTCAACAACTTCTTGAGAGGAACCCTCTGCTGGTTTTTGGAGGGGGAGAGTACAATGTTACTGATATTTTTTATGCTGCTTCTAGGAGTAAGAAATGTGAGGTTTTCAGATTGCTCTTTGATTTTGCTGTATCCCCAAGGTTTTTCACTGGTAAAGGTGGGGTTTTGGAGGAGCATGTTGGGGAAATTCCTTCTGTTTATAGGTGGGAGATGACAAATAGAGCTGTCCATGCTGCTGCTAGAGGAGGTAATGTAGAGATTTTGGAGAAGTTTCTTGCTAATTGCTCTGATGTTTTGGCTTATAGAGATGCTCAGGGCTCTACTATCTTGCATTCTGCTGCAGGCAGAGGGCAAGTTGAGGTTGTCAAATATCTTATATCATCCTTTGACATTATCAACTCCACAGACCATCAGGGCAACACTGCTTTGCATGTGGCTGCTTATAGGGGCCAGTTAGCAGCAGTTGAAACTCTAGTTTCTTCATCTCCCGGATTGATCTCTCAAAGAAACAACACAGGAGACACTTTTCTCCATAAGGCTGTGTCTGGTTTTAAGTGTCCTGCATTCCGAAGATTGGACAGACAGGTTGAGCTTTTGAGGCAGCTACTAAGTGATATGAATTTTCAAATAGAGGAAATCATCAATGTAAGGAATAGTGATGGAAGAACTGCTCTTCACATTGCCACAATGGGAAACATTCACACTGATCTTGTGAAACTCCTGATGACTGCTCCATTGTTAAATGTTAATGTAAGTGATGTTGATGGCATGACACCACTTGATTACCTTAGGCAATGTCCCAACTCTGCAATATCAGGTGTACTAATTAGAAAATTGATCTCAGCTGGAGGAATGTTCCGTTATCAAGGTTATAGTTCAAGAAAAGCCATAGCTTCACACATGAAAATGCATGGTGATAGTAGCAGCCCTGGAACGTCATTTAGAATCTCAGACACTCAAATGTTTTTGTACACAGGCATTGAGAATGCATCAGATGCTAGTACTGATCAGGGAAGTGCAGGAATGAGCTCAACTTCATCTGAACACACTCCTTATGACTCAACAGCAGAGAATAGACTCTCAACCACTAGCAAAAGGTCAAGTGCTATAAACAATGCAGCAGCAGGGTTGAAACGAGTCCTTCATTGGCCTCGGGTGAAGGACAAGAAAGGTGAAGAAGGATTCAAGAAATCAATGGATGAGGATTCAGTGGAATCTTGCAGGAAATGGAACTGTTCAGATGAAACTACTCCAACCTCACTTAGACAAAGATTTTTTAGACATTCTGCACTTTCTAGCAACAAACGGAGTCTATGTGTAAGGAGTTACCAGTCAAGTCCAAATGCTAAGAAGAGATTTGCTTCAGGACTTGTGCATGGAGAAATGCAATCCATGCCACCAGTGAAGGTTTCAGGAAGATCTCGCTCTAGTTCCTTCTCTATATCATCATTTTCTTCACCTAGATCAATAGATAAGCAAAAGGGTATTTGCATTGGCAATGATGATGTTGCTAGACCATCTTGCTCAAGTCATTTACATGGTGATGAATCACCAGATATGGGAAAGAGAGCTTCTGTAAGTAAAAAGCTAAGAGGCCATTATTTCTGTTTTGGTGAACCTAGCCTTGATGTCAAAACCTCAGTAAACAGGAAGCAAGAAACCCGTAGTTAG 2019 0.4245 MSLRYFPLRWESTGDQWWYASPIDCAAANGHYDLVRELLRIDNNHLFKLTSLRRIRRLEVVWDDEQQFNGVAKCRSEVAQKLLFECESKKGKNSLIRAGYGGWLMYTAASAGDLGFVQQLLERNPLLVFGGGEYNVTDIFYAASRSKKCEVFRLLFDFAVSPRFFTGKGGVLEEHVGEIPSVYRWEMTNRAVHAAARGGNVEILEKFLANCSDVLAYRDAQGSTILHSAAGRGQVEVVKYLISSFDIINSTDHQGNTALHVAAYRGQLAAVETLVSSSPGLISQRNNTGDTFLHKAVSGFKCPAFRRLDRQVELLRQLLSDMNFQIEEIINVRNSDGRTALHIATMGNIHTDLVKLLMTAPLLNVNVSDVDGMTPLDYLRQCPNSAISGVLIRKLISAGGMFRYQGYSSRKAIASHMKMHGDSSSPGTSFRISDTQMFLYTGIENASDASTDQGSAGMSSTSSEHTPYDSTAENRLSTTSKRSSAINNAAAGLKRVLHWPRVKDKKGEEGFKKSMDEDSVESCRKWNCSDETTPTSLRQRFFRHSALSSNKRSLCVRSYQSSPNAKKRFASGLVHGEMQSMPPVKVSGRSRSSSFSISSFSSPRSIDKQKGICIGNDDVARPSCSSHLHGDESPDMGKRASVSKKLRGHYFCFGEPSLDVKTSVNRKQETRS* 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02265 672 Gene3D - 247 401 IPR036770 -
Rops8g02265 672 SUPERFAMILY Ankyrin repeat 23 393 IPR036770 -
Rops8g02265 672 SMART ANK_2a 254 284 IPR002110 GO:0005515
Rops8g02265 672 SMART ANK_2a 336 367 IPR002110 GO:0005515
Rops8g02265 672 SMART ANK_2a 18 47 IPR002110 GO:0005515
Rops8g02265 672 SMART ANK_2a 100 129 IPR002110 GO:0005515
Rops8g02265 672 SMART ANK_2a 221 250 IPR002110 GO:0005515
Rops8g02265 672 SMART ANK_2a 288 328 IPR002110 GO:0005515
Rops8g02265 672 SMART ANK_2a 187 216 IPR002110 GO:0005515
Rops8g02265 672 SMART ANK_2a 134 164 IPR002110 GO:0005515
Rops8g02265 672 ProSiteProfiles Ankyrin repeat region circular profile. 254 276 - -
Rops8g02265 672 ProSiteProfiles Ankyrin repeat region circular profile. 221 243 - -
Rops8g02265 672 ProSiteProfiles Ankyrin repeat profile. 254 286 IPR002110 GO:0005515
Rops8g02265 672 Pfam Ankyrin repeats (many copies) 291 357 IPR002110 GO:0005515
Rops8g02265 672 Pfam Ankyrin repeats (many copies) 223 275 IPR002110 GO:0005515
Rops8g02265 672 Gene3D - 13 170 IPR036770 -
Rops8g02265 672 PANTHER ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED 5 481 - -
Rops8g02265 672 MobiDBLite consensus disorder prediction 581 609 - -
Rops8g02265 672 Gene3D - 186 246 IPR036770 -
Rops8g02265 672 MobiDBLite consensus disorder prediction 585 606 - -
Rops8g02265 672 ProSiteProfiles Ankyrin repeat profile. 221 253 IPR002110 GO:0005515
Rops8g02265 672 MobiDBLite consensus disorder prediction 449 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02265 Rops-Chr8 52158163 52160792 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02265 193 413 Miscellaneous Gene Families AT5G60070 31.739 7.42e-17 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02265 - - ccaj:109802130 1009.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02265 8 52158163 52160792 Rops8g02265 8 52158163 52160792 ECH