Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03854 ATGGCAACTACATATTTCCCACTGAGGTGGGAGAGCACTGGGGATCAGTGGTGGTATGCATCCCCAATAGATTGTGCTGCCGCAAATGGACATTATGACTTGGTTCGTGAGCTGCTTAAAATCGACAACAACCACCTCTTCAAGCTCACTTCATTGCGCAGAATTCGCCGCCTTGAAGTTGTGTGGGACGATGAAGAACAGTTCAGTGATGTTGCAAAGTGCCGTTCACAAGTTGCACATAAGTTGCTTCTTGAGTGTGAGTCAAAGAAAGGGAAGAACAAGAACTCTCTCATCCGTGCTGGGTATGGAGGGTGGTTAATGTACACCGCTGCATCTGCTGGGGACTTGACTTTTGTGCAACAACTTCTTGAGAGGAACCCTTTGTTGGTGTTCGGAGAGGGGGAGTATAATGTCACTGATATCTTTTATGCTGCTTCCAGGGGCAAGAATTGTGAGGTTTTTAGGCAGATTTTTTATTTTGCAGTTTCTCCAAGGTTTGTCACAGGTAAAGGTGGGGTTTTGGAGGAGCATGTTGGGGATATTCCTCCTGTTTACAAGTGGGAGATGAGCAATAGGGCTGTCCATGCCGCTGCTAGAGGGGGTAGTGTGGATATTTTGGAGGAGTTTCTTGCTAATTGCTCTGATGTGTTGGGTTATAGAGATGCTCAGGGCTCTACTATATTGCATTCTGCTGCAGGCAGAGGGCAGGTTGAGGTGGTTAAGTATCTCACGTCATCCTTTGACATAATAAACTCCACAGACCATCAGGGAAACTCTGCTTTGAATGTGGCTGCTTACAGGGGCCAATTAGCTGCAGTTGAGGCTCTAGTTTCCGCATGTCCTGCATTGGTTTCTATGAGAAACAATGGGGGAGACACTTTCCTCCATAAAGCTGTGTCTGGTTTTCAGTCTACCTCATTCAGAAGGTTGGACAGACAGGTTGAACTTTTGAGGCAGTTAGTAAGTTGCAAAAAATTTCACATAGAGGAAGTCATCAATGTAAAGAACACTGATGGAAGAACTGCACTCCACATTGGCACAATGGGTAAAATCCACATCGATCTTGTTAAGCTCCTGATGACTGCTCCATCAGTCAATGTGAATGTGAGTGATTGTAATGGCATGACCCCACTTGATTACCTTAAGCAAAGTCCAAACACAGCAGCATCAAATATACTGATCAGGAAGTTGGTTGCAGCTGGGGGAACGTTCCACAATCAAGGCTATAATTCAAGAACAGTCGCAGCTTCACACATGAAAATGCATAGTGTTGGAGGCAGTCCTGGAACATCTTTTAGAATCTCTGACACTCAAATGTTCTTGTACACAGGAATTGAGAATGCATCAGATGCTAGTACGGATCAGGGAAGTGTAGGAATGAGTTCATCTTCATCAGACCATACTGCATATGACTCAGCAGCAGAGAACAGACCTTCAACAACAAGCATAAGGCCATCGGTGGCTGCCGGGTTGAAACGAGTCCTTCAGTGGCCACTGGTGAAGGATAAGAAAGATGAGGGGATAAGGAAATCAATGGATGAGGGCTCAGTGGACTCATGCAGAAAATGGGACACCACAGATGAAATTCCAACTCCACTAAGACAAAAGTTCTTTAGGCATTCAACACTTCAGAACAACAAAAGGAACCTATCTGTAAGGAGCTACCAGTCAAGTCCAAATGCTAAGAAGAGATTTGCTTCAGGACTGGTACATGTGAAGGTTTCAAGAAGATCAAGCTCTAGCTCATTTTCTATATCATCATTGTCATCCCCTAGATCCATAGATAAGCAAAAGGGTTTTTGTCTTGACAATGATGTTGCTGGACCGTCTTGCACAAGTCACCAAAATGATAAATCAACAATTTCAGGGAAGAGAGCTTCTGTTAGCAAAAAGCTAAGGGGCCATTATTTCTGTTTTTCAAAAGCCTCAGTAGTCAGGGAGCAAGAAAGCCATTGTTACAAGGACCATGATGTTTTTGTGAGTGGCCTAATTGGATGA 1998 0.4429 MATTYFPLRWESTGDQWWYASPIDCAAANGHYDLVRELLKIDNNHLFKLTSLRRIRRLEVVWDDEEQFSDVAKCRSQVAHKLLLECESKKGKNKNSLIRAGYGGWLMYTAASAGDLTFVQQLLERNPLLVFGEGEYNVTDIFYAASRGKNCEVFRQIFYFAVSPRFVTGKGGVLEEHVGDIPPVYKWEMSNRAVHAAARGGSVDILEEFLANCSDVLGYRDAQGSTILHSAAGRGQVEVVKYLTSSFDIINSTDHQGNSALNVAAYRGQLAAVEALVSACPALVSMRNNGGDTFLHKAVSGFQSTSFRRLDRQVELLRQLVSCKKFHIEEVINVKNTDGRTALHIGTMGKIHIDLVKLLMTAPSVNVNVSDCNGMTPLDYLKQSPNTAASNILIRKLVAAGGTFHNQGYNSRTVAASHMKMHSVGGSPGTSFRISDTQMFLYTGIENASDASTDQGSVGMSSSSSDHTAYDSAAENRPSTTSIRPSVAAGLKRVLQWPLVKDKKDEGIRKSMDEGSVDSCRKWDTTDEIPTPLRQKFFRHSTLQNNKRNLSVRSYQSSPNAKKRFASGLVHVKVSRRSSSSSFSISSLSSPRSIDKQKGFCLDNDVAGPSCTSHQNDKSTISGKRASVSKKLRGHYFCFSKASVVREQESHCYKDHDVFVSGLIG 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03854 665 Gene3D - 13 168 IPR036770 -
Vimu6g03854 665 Gene3D - 188 247 IPR036770 -
Vimu6g03854 665 ProSiteProfiles Ankyrin repeat profile. 223 255 IPR002110 GO:0005515
Vimu6g03854 665 Pfam Ankyrin repeats (3 copies) 143 248 IPR002110 GO:0005515
Vimu6g03854 665 PANTHER ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED 2 443 - -
Vimu6g03854 665 ProSiteProfiles Ankyrin repeat region circular profile. 223 243 - -
Vimu6g03854 665 SMART ANK_2a 290 330 IPR002110 GO:0005515
Vimu6g03854 665 SMART ANK_2a 223 252 IPR002110 GO:0005515
Vimu6g03854 665 SMART ANK_2a 256 285 IPR002110 GO:0005515
Vimu6g03854 665 SMART ANK_2a 18 47 IPR002110 GO:0005515
Vimu6g03854 665 SMART ANK_2a 338 369 IPR002110 GO:0005515
Vimu6g03854 665 SMART ANK_2a 102 131 IPR002110 GO:0005515
Vimu6g03854 665 SMART ANK_2a 189 218 IPR002110 GO:0005515
Vimu6g03854 665 SMART ANK_2a 373 406 IPR002110 GO:0005515
Vimu6g03854 665 SUPERFAMILY Ankyrin repeat 22 395 IPR036770 -
Vimu6g03854 665 MobiDBLite consensus disorder prediction 451 485 - -
Vimu6g03854 665 Gene3D - 248 419 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03854 Vimu-Chr6 37425071 37429867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03854 195 420 Miscellaneous Gene Families AT5G60070 30.342 3.27e-15 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03854 - - gmx:100781079 1153.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03854 6 37425071 37429867 Vimu6g03854 6 37425071 37429867 ECH