Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g4452 ATGCCCAGTTTTCGAGTGAATATAGAAGATTATGTTACTGGGGGTGTCATGGCTTCTCCATCATGCTTCCCTCTTCGTTGGGAGAGCACAGGAAACCAGTGGTGGTATGCAGCCCCCATTGATTGGGCTGCAGCAAATGGCCTCTATGATCTTGTTGCTGAGCTTCTCCACCTTGACACCAACCTCCTCATCAAGCTCACTTCCCTCCGTAGAATTCGCCGCCTCGAAGCCGTTTGGGATGACGAGGCTAACTTTGAAGACGTTGCAAGTTGCCGCTCCAAGGTTGCAAGGAATCTCATGCTTGAATGTGAGAACGGAAGAAGGGAACACAAGTACAACTCCCTCATCCGTGCTGGCTATGGTGGATGGCTTCTCTACACTGCAGCCTCAGCAGGGGATGTGGAATTTGTGAAGGAATTGTTGAGTAGAGACCCTTTGCTTGTTTTTGGTGAGGGAGAGTATGGTGTCACTGACATACTCTATGCTGCTGCAAGGAGCAAGAATTGTGTGGTGTTCAGGCTCTTGCTTGATTCTGCACTCTCTGGGAGTGAAGAACATCATGGTGATGGTGGTGTTTTCAAGAGAGAGATGGTGAATAGAGCAATTCATGCTGCTGCAAGAGGAGGGAATTGGGAAATGCTGAAGGAGCTTGTGGAAAATGTTTCTGAGATTTTGTGCTACAGAGATTCTCAAGGGTGTACTGTCTTGCATTCAGCAGCTGGCAGAGGCCAAGTTGAGGTAGTGAGAAACTTAATTGAGTCATCTGATATTATCAACTCAACTGATGTACAAGGCAATACAGCATTACATGTGGCTTCTTACAGGGGTTACTTACCTGTGGTAGAGATTCTGGTTCAAGCATCACCCTCATTAGCATCCCTAACCAATCATTATGGAGATACTTTTCTTCACATGGCAGTGGCTGGTTTCAGAAGCCCTGGATTCCGAAGACTAGACAAGCACACTGAGCTCATGAACCAATTGATTAGTGGAAAGATTGTGGACATGCAGGACATCATAAATATCAAGAACAATGATGGAAGAACAGCTCTTCATGTAGCTGTGATTCATAACATCCAATGTGAAATAGTGGAATTACTGATGTCTATTCCATCAATTGATTTGAACGTCCGCGATGCGGATGGCATGACCCCCTTGGATCATTTGAAGCAGAGGTCACAATCAGCATCATCTGAAATCTTGATCAAGCAGTTGATTTCAGCCGGTGGCATCTCTAATTGTCAGGATTATACAGCAAGAAATACTCTTGTTACTCATCTGAAGAATCATGGCATTGTAACAAGTCCTGGCATTTCATTCAGGGTACCAGATGGTGAGATATTCTTGTACACAGGCATTGAGAAATCCTATGATGACAATTTTGATCAGGCAAGTGTGGAATCAAATTCATGGTCAAGTGGTGAACCGCATGATTACAAGCTAGCCGATTCTCCACATTGCAGCAAGTCTAGTCCTATCAACGATGCGAAAAGGCGCTTAAAGTTCCTTTTCGGGAGGCCTAGAGGAAGAGAGACTAAAAAGGCAGTATCAGAAATTCAAGATGACGATTCTGTGGCTGCTTCTTGCATCTCAAGTAAAGAGTTGGAAGACATTCCAATTCCATTAAGACAAAGATACTCAAAACTGTGTTCCCTTCCAAACAACAAGAGAACATTACCTATAATGACCAATCTCCCAAGTCCATCCAGTAGAAGTTATTTTGCTGCAGGCCTAATGCAAGGGGTAATTCAGGTAAAGCCATATGTGCCTATTGCTAATGCTGCTGCTCATTCAACTCAAAGTCTTCAAGAACATAAGGGTGTTGATATAGATTGTGGTACACGACAGTTGAACTTCAGGCAGGGTTCCTTCAATAAGAAAATGATGAATAAGTATTTTTCTTTTGGAGCACAAGAGCAGGCTTTTGAGGGTGCAAATAGCTGCACTAGGACAAATCTCAGTTCTTTAGTTACATAA 1977 0.438 MPSFRVNIEDYVTGGVMASPSCFPLRWESTGNQWWYAAPIDWAAANGLYDLVAELLHLDTNLLIKLTSLRRIRRLEAVWDDEANFEDVASCRSKVARNLMLECENGRREHKYNSLIRAGYGGWLLYTAASAGDVEFVKELLSRDPLLVFGEGEYGVTDILYAAARSKNCVVFRLLLDSALSGSEEHHGDGGVFKREMVNRAIHAAARGGNWEMLKELVENVSEILCYRDSQGCTVLHSAAGRGQVEVVRNLIESSDIINSTDVQGNTALHVASYRGYLPVVEILVQASPSLASLTNHYGDTFLHMAVAGFRSPGFRRLDKHTELMNQLISGKIVDMQDIINIKNNDGRTALHVAVIHNIQCEIVELLMSIPSIDLNVRDADGMTPLDHLKQRSQSASSEILIKQLISAGGISNCQDYTARNTLVTHLKNHGIVTSPGISFRVPDGEIFLYTGIEKSYDDNFDQASVESNSWSSGEPHDYKLADSPHCSKSSPINDAKRRLKFLFGRPRGRETKKAVSEIQDDDSVAASCISSKELEDIPIPLRQRYSKLCSLPNNKRTLPIMTNLPSPSSRSYFAAGLMQGVIQVKPYVPIANAAAHSTQSLQEHKGVDIDCGTRQLNFRQGSFNKKMMNKYFSFGAQEQAFEGANSCTRTNLSSLVT* 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g4452 658 ProSiteProfiles Ankyrin repeat profile. 264 296 IPR002110 GO:0005515
Ahy13g4452 658 Gene3D - 28 432 IPR036770 -
Ahy13g4452 658 ProSiteProfiles Ankyrin repeat region circular profile. 231 262 - -
Ahy13g4452 658 PANTHER ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED 19 652 - -
Ahy13g4452 658 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 19 652 - -
Ahy13g4452 658 Pfam Ankyrin repeat 346 379 IPR002110 GO:0005515
Ahy13g4452 658 Pfam Ankyrin repeats (3 copies) 202 287 IPR002110 GO:0005515
Ahy13g4452 658 SUPERFAMILY Ankyrin repeat 124 402 IPR036770 -
Ahy13g4452 658 SMART ANK_2a 381 414 IPR002110 GO:0005515
Ahy13g4452 658 SMART ANK_2a 35 64 IPR002110 GO:0005515
Ahy13g4452 658 SMART ANK_2a 346 377 IPR002110 GO:0005515
Ahy13g4452 658 SMART ANK_2a 264 293 IPR002110 GO:0005515
Ahy13g4452 658 SMART ANK_2a 298 338 IPR002110 GO:0005515
Ahy13g4452 658 SMART ANK_2a 197 226 IPR002110 GO:0005515
Ahy13g4452 658 SMART ANK_2a 231 260 IPR002110 GO:0005515
Ahy13g4452 658 SMART ANK_2a 120 149 IPR002110 GO:0005515
Ahy13g4452 658 ProSiteProfiles Ankyrin repeat profile. 231 263 IPR002110 GO:0005515
Ahy13g4452 658 ProSiteProfiles Ankyrin repeat region circular profile. 264 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g4452 Ahy-Chr13 144655516 144658982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g4452 97 387 Miscellaneous Gene Families AT1G07710 29.592 4.24e-21 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g4452 - - gmx:100811195 892.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g4452 13 144655516 144658982 Ahy13g4452 13 144655516 144658982 ECH
Ahy13g4452 13 144655516 144658982 Ahy3g4170 3 141660479 141663923 hybridization