Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g03162 ATGTCTCCTTCACTGTTGCCTCTTCGCTGGGAGAGCACCGGAGAACAGTGGTGGTACGCTTCTCCGATCGATTGCGCCGCCGCGAACGGCCACTACGATCTGGTGGTGGAACTTCTCCACCTCGACGCCAACCTCCTCATTAAGCTCACTTCCCTCCGCAGAATTCGGCGCCTCGAAACAGTGTGGGACGACGAGGAACACTTCGAGGACGTCGCGAAATGTCTCTCGCAGGTTGCGAGGAGCCTCATGCTGGAATGCGAGACGGGAAGAGGAACCAACTCTCTCATTCGCGCCGGGTACGGCGGGTGGCTCCTCTACACCGCCGCCTCTGCCGGTGACGTGGATTTCGTCCGGGAACTATTGGGGAGGAACCCTGCGCTTGTGTTGGGAGAAGGAGAGTATGGAGTGACTGATATACTGTATGCTGCTGCGAGGAGCAATAACTGTGAGGTGTTTGAGGTTGTGTTTCGTTCTGCTCTCTCGCCGCTGGCGCAGATGGAAGAGGTTTACGAGAGGGATATGACGAATAGGGCGGTTCATGCTGCTGCGAGAGGAGGGAACTGGGAGATGCTGAAACAGCTTGTGGAAGAGGGTTGTGGCGTTTTGGGGTTTAGAGATGCTCAAGGTTGCACCGTTTTGCATACTGCAGCTGCCAGAGGACAGGTTCAGGTGGTGAGAAATCTACTTGCATCATTCGATGTTGTAAACTTAACAGATGATCAAGGGAACACAGCGTTACATGTAGCATCTTACGGGGGTCACTTATCTGTGGTGGAGATTCTGATTCTTGCATCTCCTTCATTAGCATTGTTAACCAACCACTATGGAGATACTTTTCTTCATATGGCAGTGGCTGGTTTCAGAAGTCCCGGTTTCCGTAGACTGGACAAACATGCTGAACTCTTGAAGCAATTGGTTTGTGGAAAGATTGTGAACTTACAGAACATCATCAATGTCAAGAACAATGATGGAAGAACGGTTCTTCATGTGTCAGTGATTGATAATCTTCAATGCGAGCTAGTGGAACTGTTGATGTCTGTGCCATCAATTGATCTGAACATTTGTGATGCTGATGGGATGACCCCTTTGGATCTTCTAAAACAAAGACCAAAATCAGCATCTTCTGATATTTTAATCAAGATGATAATTTCCTCTGGAGGGGTCTCTAATGGTCGAAATGCTATAGCAGAAAATGCACTTTGCACTCATCACAAAGCTCATGTCATTGGAGGGAGTCCTGGCACTTCGTTTAGAATACCAGATGCTGAGATATTCCTGTATACTGGAATTGAGAATTCATCAGATGCCAATTATGATCAAGCAAGTGTGGAATCATATTCCTGCTCAAACGAACCAAGCAATTCTGACTCCGAAACTTCTCCACACACCAAGAAGTATGATAATTCTGCTAATCGTGCTGTAAGGCGTTCGAAGTTTCGTCTCAGGTGGCCTAAAAGAAAAGAGACAAAAGCAGCTGCATCAGAATTAGAAGATGACGATTCTCTTGATCCTTTTAGTTCAAGTAGAAACTTGGAAGATTTTCCAATTCCATTGCGGCAAAGATACTCACAACCATGCTCCCTCCCAAACAACAAAAGAACAACTTCTCTTCCAAGTCCAACCTCCAAAGTGAAATTCAGTGCTGGGTTGATGCAAGGTGTGATTCAAGCAAAACCACATTTTTCTCATTCAACTCCAAGTCCTTTCCAAGAATTATCTGTGGCTTCTCTTTCTTCCATCAAGAAACAAAAGGGTACTGATATAAAGGGACCCTCTTGCTCTAATCCACCATTGGAGGACAGAGAACTTCTGTTGAACTACAAACATTGTTCCCTCAATAAAAAATTGATGAATGGATATTTTTCCTTTGGGGCACAAGGCTTGGCTGTTGAAAATTCCAATAGCTGTGCAAAGTCAAACAGGAGTTACAAGCGTTTGAGTTCCATAGTTGCCTGA 1956 0.4611 MSPSLLPLRWESTGEQWWYASPIDCAAANGHYDLVVELLHLDANLLIKLTSLRRIRRLETVWDDEEHFEDVAKCLSQVARSLMLECETGRGTNSLIRAGYGGWLLYTAASAGDVDFVRELLGRNPALVLGEGEYGVTDILYAAARSNNCEVFEVVFRSALSPLAQMEEVYERDMTNRAVHAAARGGNWEMLKQLVEEGCGVLGFRDAQGCTVLHTAAARGQVQVVRNLLASFDVVNLTDDQGNTALHVASYGGHLSVVEILILASPSLALLTNHYGDTFLHMAVAGFRSPGFRRLDKHAELLKQLVCGKIVNLQNIINVKNNDGRTVLHVSVIDNLQCELVELLMSVPSIDLNICDADGMTPLDLLKQRPKSASSDILIKMIISSGGVSNGRNAIAENALCTHHKAHVIGGSPGTSFRIPDAEIFLYTGIENSSDANYDQASVESYSCSNEPSNSDSETSPHTKKYDNSANRAVRRSKFRLRWPKRKETKAAASELEDDDSLDPFSSSRNLEDFPIPLRQRYSQPCSLPNNKRTTSLPSPTSKVKFSAGLMQGVIQAKPHFSHSTPSPFQELSVASLSSIKKQKGTDIKGPSCSNPPLEDRELLLNYKHCSLNKKLMNGYFSFGAQGLAVENSNSCAKSNRSYKRLSSIVA 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g03162 651 MobiDBLite consensus disorder prediction 441 542 - -
Vian2g03162 651 MobiDBLite consensus disorder prediction 486 506 - -
Vian2g03162 651 ProSiteProfiles Ankyrin repeat region circular profile. 208 229 - -
Vian2g03162 651 SUPERFAMILY Ankyrin repeat 22 379 IPR036770 -
Vian2g03162 651 Pfam Ankyrin repeats (3 copies) 180 262 IPR002110 GO:0005515
Vian2g03162 651 ProSiteProfiles Ankyrin repeat region circular profile. 241 262 - -
Vian2g03162 651 MobiDBLite consensus disorder prediction 523 542 - -
Vian2g03162 651 MobiDBLite consensus disorder prediction 441 457 - -
Vian2g03162 651 PANTHER ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED 6 465 - -
Vian2g03162 651 SMART ANK_2a 275 315 IPR002110 GO:0005515
Vian2g03162 651 SMART ANK_2a 323 354 IPR002110 GO:0005515
Vian2g03162 651 SMART ANK_2a 18 47 IPR002110 GO:0005515
Vian2g03162 651 SMART ANK_2a 174 204 IPR002110 GO:0005515
Vian2g03162 651 SMART ANK_2a 241 270 IPR002110 GO:0005515
Vian2g03162 651 SMART ANK_2a 134 164 IPR002110 GO:0005515
Vian2g03162 651 SMART ANK_2a 100 129 IPR002110 GO:0005515
Vian2g03162 651 SMART ANK_2a 208 237 IPR002110 GO:0005515
Vian2g03162 651 MobiDBLite consensus disorder prediction 458 474 - -
Vian2g03162 651 Gene3D - 11 402 IPR036770 -
Vian2g03162 651 ProSiteProfiles Ankyrin repeat profile. 208 240 IPR002110 GO:0005515
Vian2g03162 651 ProSiteProfiles Ankyrin repeat profile. 241 273 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g03162 Vian-Chr2 52115505 52117892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g03162 105 365 Miscellaneous Gene Families AT2G31820 31.955 2.69e-20 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g03162 - - vun:114165357 1146.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g03162 2 52115505 52117892 Vian2g03162 2 52115505 52117892 ECH
Vian2g03162 2 52115505 52117892 Vian1g02707 1 40901701 40904293 PCT