Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05082 ATGGAGAAATTTGTTATGACTTGCTTGAATTCAGATATGGGAACATCAGAGTTAAAGTGTTGGATGTCATTGAGGCAAGCAATAAGAGGATGGAATCTTTATGGTGGAGAGATGTTAGATCAATTGAAATGTGTCATGGAAATGTCCAAAATTGGTTTGGAGGTGGCATCAATTATGATTAAGACAATGGTTGAAGTAATAAAATTCTTGAGTTATGGACTCCAACCTAAATTAGTAGGATTGAATAGGATCTCAGAGATGGAAGGAAAATCAGAAAGGGAGAAGAAAATTGAAGAATGGCTTCCTATTAATGCAGATAGAAGTGCAAAATGGTGGAACTCAGCTTTTCACAATGTCACTGCCATGGTTGGAGCTGGTGTTCTTGGTCTCCCCTATGCCATGTCACAACTTGGATGGGGTCCAGGTGTAACTTTACTTACCCTTTCATGGATCATTACATTATACACATTGTGGCAAATGGTTGAGATGCATGAAATGGTTTCAGGAAAGCGTTTTGATAGATACCATGAACTTTGTCAACATGCATTTGGAGAAAAGTTGGGTCTTTATATTGTGGTTCCTCAACAAATTATAGTAATGCTTGGTGGGAACATTGTGTACATGGTCATTGGGGGTGCATCGTTGCAGAAGTTCCATGATATAGTATGTCCAAGTTGTAAAAAGATTAAATTGACCTTTTTCATTATGATATTTGCCTCTGCTCAATTCGTATTGGCTCATCTACCTAGCTTCAACTCCATTTCTGGTGTATCTTTGGTTGCAACAATCATGTCCATTGGTTATTCTACAATTGCTTGGGTTGCTAGTGCGCATAAGGGAGTACAAGAAAATGTAGAATATAGTAACACGGCTACAACTAGTGCTAACTTAGTCTTTAATTTCTTTAATGCACTTGGATCTGTTGCTTTTGCTTATGCTGGACACAATGTGGTATTGGAAATCCAAGCAACAATCCCATCAACACCTGAAAAACCATCTAAGGTTCCAATGTGGAGAGGAGTTATTTTTGCCTACATTATTGTTGCTTTGTGTTATTGGCCAGTTGCTATTATTGGTTATTGGATGTTTGGTAATGAGGTTAAGGATAATATTCTCATCTCTTTAGAGAAACCAACTTGGGTGATTGCAATGGCCAACTTATTTGTTGTTCTTCATGTAATAGGAAGCTATCAGGTTTATGCAATGCCAATGTTTGACATGCTTGAAAGTGTATTGGTAAAGAAATCAAATTTTGAACCAAGTTTAATCCTTCGTTTTATTGTTCGTAATCTATACGTGGCATTCACAATGTTCATTGCTATTACATTCCCATTTTTCGGTGGTTTATTAGGTTTTTTTGGAGGATTCGCGGTTACTCCAACAACATACTTTCTTCCATGTATCATATGGCTTAAAATTTATAAACCTAAAAGATTCAGCTTGTCTTGGTGTACTAATTGGATATGTATTGTGCTTGGGCTATCTAAGCATTAA 1494 0.3681 MEKFVMTCLNSDMGTSELKCWMSLRQAIRGWNLYGGEMLDQLKCVMEMSKIGLEVASIMIKTMVEVIKFLSYGLQPKLVGLNRISEMEGKSEREKKIEEWLPINADRSAKWWNSAFHNVTAMVGAGVLGLPYAMSQLGWGPGVTLLTLSWIITLYTLWQMVEMHEMVSGKRFDRYHELCQHAFGEKLGLYIVVPQQIIVMLGGNIVYMVIGGASLQKFHDIVCPSCKKIKLTFFIMIFASAQFVLAHLPSFNSISGVSLVATIMSIGYSTIAWVASAHKGVQENVEYSNTATTSANLVFNFFNALGSVAFAYAGHNVVLEIQATIPSTPEKPSKVPMWRGVIFAYIIVALCYWPVAIIGYWMFGNEVKDNILISLEKPTWVIAMANLFVVLHVIGSYQVYAMPMFDMLESVLVKKSNFEPSLILRFIVRNLYVAFTMFIAITFPFFGGLLGFFGGFAVTPTTYFLPCIIWLKIYKPKRFSLSWCTNWICIVLGLSKH 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05082 497 Pfam Transmembrane amino acid transporter protein 108 494 IPR013057 -
Vifa1g05082 497 PANTHER OS05G0424000 PROTEIN-RELATED 106 487 - -
Vifa1g05082 497 FunFam Lysine histidine transporter 1 104 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05082 Vifa-Chr1 792760387 792764773 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05082 82 494 Organic Solute Cotransporters AT1G48640 71.913 0.0 619
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05082 K26385 - gmx:100804680 680.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g05082 1 792760387 792764773 Vifa1g05082 1 792760387 792764773 ECH