Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01745 ATGGCATCAGACAAGAAGATTAAGATCGGAATCAATGGATTTGGAAGGATTGGCCGTTTGGTGGCCAGGGTTGCTCTTCAAAGGGACGATGTTGAGCTTGTAGCCGTTAACGATCCTTTCATTACCACTGATTACATGACATACATGTTCAAGTACGACACCGTTCATGGCCAGTGGAAACATTTTGATGTTAAGGTGAAGGACTCTAAGACCCTTCTCTTTGGTGAGAAGGCTGTCACCGTTTTTGGAATTAGGAACCCTGAGGATATTCCATGGGGTGAGGCTGGTGCTGATTATGTTGTTGAATCAACTGGTGTTTTCACTGACAAGGAAAAGGCTGCTGCTCACTTGAAGGGTGGTGCCAAGAAGGTTGTCATTTCTGCCCCAAGCAAAGATGCACCAATGTTTGTTGTTGGTGTTAACGAGAAGGAATACAAGCCAGAGCTTAACATTGTTTCCAATGCTAGCTGCACTACCAATTGCCTTGCTCCTCTCGCCAAGGTTATCAATGACCGATTCGGAATTGTCGAGGGTCTTATGACTACTGTTCACGCCATCACAGCTACTCAGAAGACTGTTGATGGTCCATCAAACAAGGACTGGAGGGGTGGAAGAGCTGCTTCCTTCAATATAATCCCCAGCAGCACTGGAGCTGCTAAGGCTGTAGGAAAAGTCCTTCCAGCACTAAATGGTAAATTGACTGGAATGTCTTTCCGAGTTCCTACCGTTGATGTTTCAGTCGTTGACCTCACTGTTAGATTGGAGAAGGCAGCAACCTATGAGCAAATCAAAGCTGCTATCAAGTGA 807 0.4572 MASDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHFDVKVKDSKTLLFGEKAVTVFGIRNPEDIPWGEAGADYVVESTGVFTDKEKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELNIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHAITATQKTVDGPSNKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKAATYEQIKAAIK. 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01745 268 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 156 268 - -
Seca6g01745 268 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 155 162 IPR020830 GO:0016620
Seca6g01745 268 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 151 169 IPR020831 GO:0016620
Seca6g01745 268 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 178 194 IPR020831 GO:0016620
Seca6g01745 268 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 116 129 IPR020831 GO:0016620
Seca6g01745 268 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 235 252 IPR020831 GO:0016620
Seca6g01745 268 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 7 110 IPR020828 GO:0051287
Seca6g01745 268 SMART gp_dh_n_7 7 157 IPR020828 GO:0051287
Seca6g01745 268 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 6 268 IPR020831 GO:0016620
Seca6g01745 268 FunFam Glyceraldehyde-3-phosphate dehydrogenase 156 268 - -
Seca6g01745 268 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 162 268 IPR020829 GO:0016620
Seca6g01745 268 Gene3D Dihydrodipicolinate Reductase; domain 2 156 268 - -
Seca6g01745 268 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 173 IPR036291 -
Seca6g01745 268 FunFam Glyceraldehyde-3-phosphate dehydrogenase 7 167 - -
Seca6g01745 268 Gene3D - 7 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01745 Seca-Chr6 72284572 72287106 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01745 K00134 - gmx:100782924 509.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g01745 6 72284572 72287106 Seca6g01745 6 72284572 72287106 ECH
Seca6g01745 6 72284572 72287106 Seca4g02890 4 49841218 49844404 ECH