Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01919 ATGGCATCAGACAAGAAGATTAGGATTGGTATCAACGGATTCGGAAGGATTGGTCGTTTGGTGGCCAGGGTTGCCCTTCAAAGGAACGATGTTGAACTCGTTGCTATCAACGATCCTTTCATCAACACTGATTACATGACATATATGTTCAAGTATGACACCGTTCATGGCCAGTGGAAGCATTTTGATGTCAAGGTGAAGGACTCTAACACCCTTCTCTTTGGTCAGAAGCCTGTGACAGTTTTTGGTATCAGGAACCCCGAGGATATTCCATGGGGTGAGGCTGGTGCTGATTATATTGTTGAGTCAACTGGTGTATTCACTGACGAGCAGAAAGCTGCTGCTCACTTGAAGGGTGGTGCCAAAAAGGTTGTAATTTCTGCTCCAAGCAAAGATGCACCCATGTTTGTTGTTGGTGTTAACGAGAAAGAATACAAAGGGCAGACCATTGTTTCCAATGCTAGCTGCACTACCAATTGCCTTGCTCCCCTCGCCAAGGTTATCAATGACCGATTTGGAATTGTTGAGGGTCTCATGACCACTGTTCACGCCATCACAGCTACTCAGAAGACTGTTGATGGTCCATCAAACAAGGATTGGAGGGGTGGAAGAGCTGCTTCCTTCAATATTATTCCCAGCAGCACTGGAGCTGCCAAGGCTGTAGGAAAAGTTCTTCCAGCACTGAATGGCAAATTGACTGGAATGTCCTTCAGAGTTCCCACTGCTGATGTTTCAGTTGTTGATCTCACTGTTAGACTAGAAAAGCCAGCAACCTACGAGCAAATCAAGGCTGCTATCAAGGAGGAATCAGAGGGCAACTTGAAGGGTATTTTGGGTTACACTGAAGATGATGTTGTGTCTACTGATTTTGTTGGTGATAGCAGGTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAGAACTTTGCAAAGCTTGTTTCGTGGTACGACAACGAATGGGGTTACAGTACCCGTGTGGTCGATTTGATTGTCCACATTGCAGCTTAA 1014 0.4546 MASDKKIRIGINGFGRIGRLVARVALQRNDVELVAINDPFINTDYMTYMFKYDTVHGQWKHFDVKVKDSNTLLFGQKPVTVFGIRNPEDIPWGEAGADYIVESTGVFTDEQKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKGQTIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHAITATQKTVDGPSNKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTADVSVVDLTVRLEKPATYEQIKAAIKEESEGNLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGISLNENFAKLVSWYDNEWGYSTRVVDLIVHIAA 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01919 337 FunFam Glyceraldehyde-3-phosphate dehydrogenase 155 320 - -
Spst1g01919 337 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 172 IPR036291 -
Spst1g01919 337 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 6 336 IPR020831 GO:0016620
Spst1g01919 337 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 161 318 IPR020829 GO:0016620
Spst1g01919 337 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 7 109 IPR020828 GO:0051287
Spst1g01919 337 Gene3D - 8 334 - -
Spst1g01919 337 SMART gp_dh_n_7 7 156 IPR020828 GO:0051287
Spst1g01919 337 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 154 161 IPR020830 GO:0016620
Spst1g01919 337 PIRSF GAPDH 5 337 IPR020831 GO:0016620
Spst1g01919 337 FunFam Glyceraldehyde-3-phosphate dehydrogenase 7 166 - -
Spst1g01919 337 NCBIfam glyceraldehyde-3-phosphate dehydrogenase, type I 8 330 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
Spst1g01919 337 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 150 168 IPR020831 GO:0016620
Spst1g01919 337 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 234 251 IPR020831 GO:0016620
Spst1g01919 337 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 116 129 IPR020831 GO:0016620
Spst1g01919 337 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 274 289 IPR020831 GO:0016620
Spst1g01919 337 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 177 193 IPR020831 GO:0016620
Spst1g01919 337 Gene3D Dihydrodipicolinate Reductase; domain 2 156 322 - -
Spst1g01919 337 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 155 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01919 Spst-Chr1 27428321 27430582 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01919 K00134 - gmx:100782924 622.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01919 1 27428321 27430582 Spst1g01919 1 27428321 27430582 ECH