Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2202 ATGTCTCTTCCGTCGTATTTTCCTCTTCGTTGGGAAAGCACACGACAACAATGGTGGTACGCATCGCCAATTGACTTAGCAGCCTCAAACGGCCACTACGATCTCGTTATCGAGCTTCTCCACCTCGACACAAACCTCTTAATCAAACTCACTTCCCTTCAAAGAATTCGCCGCCTCGAAACACTCTGGGACTACGACGAATCACAGTTCCACGGCGTCGCTAAATGCCGCTCCCACGTCGCGAGAAAACTCATGCTCGAATGCGGAACGGGGAAGAGAAACTCTCTTGTTAAAGCTGGATATGGCGGATGGCTTCTTTACACTGCTGCTTCTGCTGGTGACGTGGAATTTGTTCGTGAATTGTTGATAAGAGAAGGTTCTCTTGTTTTTGGTGAAGGTGAGTATGGTGTTACGGATATTTTGTATGCTGCTGCGAGGAGTAAAGATAGTGAGGTTTTTAAGATTGTGTTTGATTATGCAATGCTGAAAAATAGTGGACAAGAGTTCGATTTGGATGAGGTTTTTAAGATCGATATGGTGAATAGAGCTGTTCATGCCGCGGCTAGAGGTGGTAATTGGGAGATGCTCAATGAGTTTCTTGAAAGTGTTTCTGACATTTTGGCTTATAGAGATTCTCATGGATGCACTGTTTTGCATTCAGCCGCTGCTACCGGACAAGTCGAGGTGGTGAGAAAGCTACTTGAATCTTTTGATATCATTGGCTTAACCGATGATCATGGGAACACGGCGTTACATGTAGCTTGTTACAGGGGTTACTTACCCGTGGTGGAGATTCTAATAGATGCATCTCCCTCGCTAGCACTGTTAGTTAACCATCATGGAGATACTTTACTTCATTTGGCAGTGGCTGGTTTCAAAAGTCCTGGTTTCTGTAGACTAGACAAGCATTTCGAACTTGTGAAGGAATTGGTGAGTGAGAAGATTGTGAAGATACGAGACATCGTCAATTTAAAGAACAATGATGGAAGAACTGCTCTTCATGTATCCGTGATTGATAACATCCAAGTTGAGGTAGTGGAATTGTTGATGTCTTTGATGTCGATTGATTTGAACACTCGTGATGTTGACGGGCTGACCCCTTTAGATCTTTTGAAGCAAAGGTCACGATCGACTTCTACTGATTTTTTAATCAAAAGGTTGATTTCTGCGGGAGGGATGAATTGTGAACTTATTTCGAACAATTCTGAGTCAAGTTGTACTGTGCAGCCGCTGCAAAAGATTCAAATCGGTGTAAATGGAGTCAGTCCCGGGACTTCGTTTAGAATACCAGATGCAGAGATATTCTTGTACACTGGCATTGAGAATACATCTGATGCTAATTATGTTGAAACAAGTCCTGGATCATATTCCGGCTCAAGTGAACTAAGTAACAACTCTGACGGTGCCAATTCTCCATATAACCACAAATCTAGCTCGGTTAATAGTGCTGCAAGACGCTTAAAGTTTCTTCTAAGGTGGCGTAGGAGAAAAGAAAGAAAAGACAGAAAAGCCGCTTTCTCAGATTTGGAAGATGATGATTCTCTTGATCCTTTTAGTTCGAGTAGAAACTTGGATGAGTTTTCAATTCCATTAAGGCAAAGATACTCACAATCATCTTCCCTTAGAACACATTCAATTCGGAGTTTTCTTCCCAGTCCATCCTCCAAAATGAATTTCGCTACAGGCCTCATCCAAGGAGTAATTCAGCTAAATCCACATGTTACTCTTCCTCCTCATTCAACTCCTAATCTTTTTCAAGAATTGTCTGTGGTTTCTCTTTCTTCGATCAATAAACAAAAGAATCTTGATATAATTGGACCCTCTTGCTCAAATCGATCGATAAAAGACAATAGCACACTTCACTTGAACTACAAACAGGATTCGTTCAATAAGAACTTGATGAATCCATATCTTTCTTTTGGAGCACAAGACCTGATAAACATGGAAGATTCAAATAGCTGTGAACCAAATCGGAGTTATAAGCGTTTCAGTTCGTTAGTTGCCTAG 2007 0.4165 MSLPSYFPLRWESTRQQWWYASPIDLAASNGHYDLVIELLHLDTNLLIKLTSLQRIRRLETLWDYDESQFHGVAKCRSHVARKLMLECGTGKRNSLVKAGYGGWLLYTAASAGDVEFVRELLIREGSLVFGEGEYGVTDILYAAARSKDSEVFKIVFDYAMLKNSGQEFDLDEVFKIDMVNRAVHAAARGGNWEMLNEFLESVSDILAYRDSHGCTVLHSAAATGQVEVVRKLLESFDIIGLTDDHGNTALHVACYRGYLPVVEILIDASPSLALLVNHHGDTLLHLAVAGFKSPGFCRLDKHFELVKELVSEKIVKIRDIVNLKNNDGRTALHVSVIDNIQVEVVELLMSLMSIDLNTRDVDGLTPLDLLKQRSRSTSTDFLIKRLISAGGMNCELISNNSESSCTVQPLQKIQIGVNGVSPGTSFRIPDAEIFLYTGIENTSDANYVETSPGSYSGSSELSNNSDGANSPYNHKSSSVNSAARRLKFLLRWRRRKERKDRKAAFSDLEDDDSLDPFSSSRNLDEFSIPLRQRYSQSSSLRTHSIRSFLPSPSSKMNFATGLIQGVIQLNPHVTLPPHSTPNLFQELSVVSLSSINKQKNLDIIGPSCSNRSIKDNSTLHLNYKQDSFNKNLMNPYLSFGAQDLINMEDSNSCEPNRSYKRFSSLVA* 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2202 668 Pfam Ankyrin repeats (3 copies) 185 269 IPR002110 GO:0005515
Psa5g2202 668 PANTHER ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED 4 662 - -
Psa5g2202 668 ProSiteProfiles Ankyrin repeat profile. 213 245 IPR002110 GO:0005515
Psa5g2202 668 SMART ANK_2a 135 165 IPR002110 GO:0005515
Psa5g2202 668 SMART ANK_2a 19 48 IPR002110 GO:0005515
Psa5g2202 668 SMART ANK_2a 328 359 IPR002110 GO:0005515
Psa5g2202 668 SMART ANK_2a 101 130 IPR002110 GO:0005515
Psa5g2202 668 SMART ANK_2a 213 242 IPR002110 GO:0005515
Psa5g2202 668 SMART ANK_2a 280 320 IPR002110 GO:0005515
Psa5g2202 668 SMART ANK_2a 246 275 IPR002110 GO:0005515
Psa5g2202 668 SMART ANK_2a 179 208 IPR002110 GO:0005515
Psa5g2202 668 Gene3D - 12 413 IPR036770 -
Psa5g2202 668 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 4 662 - -
Psa5g2202 668 ProSiteProfiles Ankyrin repeat profile. 246 278 IPR002110 GO:0005515
Psa5g2202 668 ProSiteProfiles Ankyrin repeat region circular profile. 213 235 - -
Psa5g2202 668 SUPERFAMILY Ankyrin repeat 105 385 IPR036770 -
Psa5g2202 668 MobiDBLite consensus disorder prediction 451 479 - -
Psa5g2202 668 ProSiteProfiles Ankyrin repeat region circular profile. 246 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2202 Psa-Chr5 173485940 173488558 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2202 78 369 Miscellaneous Gene Families AT1G07710 29.236 1.58e-22 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2202 - - gmx:100796359 801.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g2202 5 173485940 173488558 Psa5g2202 5 173485940 173488558 ECH
Psa5g2202 5 173485940 173488558 Psa7g1834 7 132691549 132694007 PCT