Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1225 ATGGCATCGGACAAGAAGATCAAGATAGGAATCAATGGATTTGGAAGGATTGGCCGATTGGTGGCCAGGGTGGCTCTTCTAAGAGACGATGTTGAGCTCGTTGCAGTCAACGATCCTTTCATCAGCACTGAATATATGACATACATGTTTAAGTATGATACTGTTCATGGGACATGGAAGCACTTTGATGTCAAGGTGAAGGACTCTAAGAACCTTCTCTTTGGAGAGAAGTCCGTCACTGTTTTCGGACTCAGGAACCCTGAGGAGATCCCATGGGCTGAGGCCGGTGCTGAATATGTTGTTGAGTCAACTGGTGTCTTCACAGACAAGGAAAAGGCTGCTGCCCACTTGAAGGGTGGTGCTAAGAAGGTTGTCATTTCTGGCCCAAGCAAAGATGCACCCATGTTTGTTGTCGGAGTTAACGAGAAGGAATACAAGCCAGATCTTAACATTGTTTCCAATGCTAGCTGCACTACCAATGGCCTTGCTCCCCTCGCCAAGGTTATCAACGATAGATTTGGAATTGTTGAGGGTCTCATGACCACTGTCCATGCCATCACTGCCACTCAGAAGACTGTTGATGGTCCATCAAACAAGGACTGGAGGGGTGGAAGAGCTGCTTCCTTCAACATTATTCCCACCAGCACAGGAGCTGCCAAGGCTGTTGGAAAAGTTCTGCCCCAGCTTAATGGCAAATTGACTGGAATGTGTTTCCGAGTCCCTATCGTTGATGTGTCAGTTGTGGACCTTACCGTCAGGCTAGAGAAAAAGGCAACCTATGAGCAGATCAAAGCTGCCATTAAAGAGGAATCAGAGGGTAGCCTGAAGGGAATATTGGGTTACACTGAAGATGATGTGGTGTCTACCGACTTCCTTGGTGACAGCAGATCAAGCATATTTGACGCTAAGGCTGGAATTGCTTTGAATGAGAACTTTGTTAAGCTTGTTGCTTGGTATGACAATGAATGGGGTTACAGTACCCGCGTGATTGATTTGATTGTCCACATTGCTACTGTTGCTTAA 1023 0.4653 MASDKKIKIGINGFGRIGRLVARVALLRDDVELVAVNDPFISTEYMTYMFKYDTVHGTWKHFDVKVKDSKNLLFGEKSVTVFGLRNPEEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISGPSKDAPMFVVGVNEKEYKPDLNIVSNASCTTNGLAPLAKVINDRFGIVEGLMTTVHAITATQKTVDGPSNKDWRGGRAASFNIIPTSTGAAKAVGKVLPQLNGKLTGMCFRVPIVDVSVVDLTVRLEKKATYEQIKAAIKEESEGSLKGILGYTEDDVVSTDFLGDSRSSIFDAKAGIALNENFVKLVAWYDNEWGYSTRVIDLIVHIATVA 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1225 340 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 6 337 IPR020831 GO:0016620
Lele24g1225 340 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 156 319 - -
Lele24g1225 340 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 235 252 IPR020831 GO:0016620
Lele24g1225 340 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 116 129 IPR020831 GO:0016620
Lele24g1225 340 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 178 194 IPR020831 GO:0016620
Lele24g1225 340 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 151 169 IPR020831 GO:0016620
Lele24g1225 340 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 275 290 IPR020831 GO:0016620
Lele24g1225 340 SMART gp_dh_n_7 7 157 IPR020828 GO:0051287
Lele24g1225 340 PIRSF GAPDH 5 340 IPR020831 GO:0016620
Lele24g1225 340 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 155 162 IPR020830 GO:0016620
Lele24g1225 340 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 7 110 IPR020828 GO:0051287
Lele24g1225 340 TIGRFAM GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 8 331 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
Lele24g1225 340 Gene3D Dihydrodipicolinate Reductase; domain 2 156 321 - -
Lele24g1225 340 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 177 IPR036291 -
Lele24g1225 340 FunFam Glyceraldehyde-3-phosphate dehydrogenase 156 321 - -
Lele24g1225 340 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 162 319 IPR020829 GO:0016620
Lele24g1225 340 FunFam Glyceraldehyde-3-phosphate dehydrogenase 7 166 - -
Lele24g1225 340 Gene3D - 7 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1225 Lele-ChrLele24 16220300 16222684 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele24g1225 24 16220300 16222684 Lele24g1225 24 16220300 16222684 ECH
Lele21g1313 21 21275219 21277845 Lele24g1225 24 16220300 16222684 hybridization
Lele22g1310 22 18585362 18587754 Lele24g1225 24 16220300 16222684 hybridization