Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1339 ATGGGTGATGTTCGTAACCATGAACCCAAAGAGGATTCTTCAGCCCAAACCCTACTTCTTGGTGTGAATCGAACCCATGAGGAAGTAGAAGAAGAATGGTGTAACACCCACCTCGATGAGACCCTTCAACGGTTAGAGTCGTTTCTATGCGTTCTGGGCTTCCACCAATCCTCTGTATTGAGTATTGGGCTCTCGTGGACTGTGTTTTTTGTTATTGGCGTGTTGCTTCCAGTTGTGGTGCTTGAGCTCTCCAATTGTGAGGGGTGTGACAAGTATCAAATCAAGGATTTCGAGCTCGATATTGTGGCTTTGCAGACGTGCCTCGCGGCTGTTTCTTTGCTTTGTCTTTCTCATAATCTTCGAAAGTATGGTATCCGGAAATTTCTCTTTGTTGATCGGTTCAGTGGCCAGATGGTTCGGTTTCGGGACCAGTATGTGCAGAAAATTACGGGTTCATTACGGTTGCTTGTGTCATGGATATTGCCATGTTTCTTGCTAAAGACTGCACGTGAAGTCATTCGCATGTTATATGTACAACATGAATCATGGTGGCTGTCTGTTGCTATCTTGTTAGCTTTGATTGTGTCATGGACTTATGTTTCTATGATCTCTCTAACAGCCTGCACCTTGTTTCATTTGGTCTGCAATTTGCAAGTTATCCACTTTGATGATTATGGGAAACTGTTGGAAAGTGAATCTGATGTTTTGGTATTTATGGAAGAGCACATTCGTCTAAGACATCACCTCTCTAAGATAAGCCACAGATTCCGAATCTATCTTCTTCTGGAATTCTTGGTTGTCACAGCAAGTCAATTTGTAACACTATTCCAGACCACAGGATATAGTGGAATAATTACTTTCATAAATGGTGGTGATTTTGCAGTCTCCTCACTTGTTCAGGTTGTTGGGATAATTCTTTGCTTGCATGCAGCCACAAAAATTTCCCATAGGGCCCAAGGCATTGCATCACTGGCAAGCAAATGGCATGCTATGTCAACATGCAGCTCTACTGATACATCTCAATTGAGAACTTCAACTAGTACGGGAAATTTAGAGGCTTACAATAGACTGAACTCACTTCATATAAACTACTCTGAAAGTGATTTGGAGTCACTGGATTATGTCGTTATGCCTACAAGTGCACAATTGGCTTCATATATGTCCTCATATCACAAGAGACAAGCATTTGTGATGTATTTGCAGAACAACCCCGGGGGAATTACTATATTTGGATGGACAGTGGATCGGGCTCTCATCAATACAATCTTCTTTATTGAACTCTCACTGATCACCTTTGTACTAGGGAAGACCATAGTTTTCTCTTCACAGTGA 1332 0.4197 MGDVRNHEPKEDSSAQTLLLGVNRTHEEVEEEWCNTHLDETLQRLESFLCVLGFHQSSVLSIGLSWTVFFVIGVLLPVVVLELSNCEGCDKYQIKDFELDIVALQTCLAAVSLLCLSHNLRKYGIRKFLFVDRFSGQMVRFRDQYVQKITGSLRLLVSWILPCFLLKTAREVIRMLYVQHESWWLSVAILLALIVSWTYVSMISLTACTLFHLVCNLQVIHFDDYGKLLESESDVLVFMEEHIRLRHHLSKISHRFRIYLLLEFLVVTASQFVTLFQTTGYSGIITFINGGDFAVSSLVQVVGIILCLHAATKISHRAQGIASLASKWHAMSTCSSTDTSQLRTSTSTGNLEAYNRLNSLHINYSESDLESLDYVVMPTSAQLASYMSSYHKRQAFVMYLQNNPGGITIFGWTVDRALINTIFFIELSLITFVLGKTIVFSSQ* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1339 443 PANTHER RAS GUANINE NUCLEOTIDE EXCHANGE FACTOR K 18 440 IPR021924 -
Vvi1g1339 443 Pfam Protein of unknown function (DUF3537) 41 425 IPR021924 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1339 Vvi-Chr1 19586824 19600122 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1339 - - vvi:100240965 880.167