Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01743 ATGCCTCCGTCGTATTTTCCTCTCCGTTGGGAAAGCACAGGAGAACAATGGTGGTATGCATCTCCCATTGATTGGGCTGCTGCAAATGGTCTCTACGATCTGGTGGTTGAGCTTCTTCACCTTGACACAAATCTCCTCATTAAGCTCACTTCACTTCGTAGGATTCGTCGTCTTGAAACAGTGTGGGATGATGAGGCACAGTTTGAAGACGTCGCTAAATGTCGCTCGCAGGTTGCAAGGAATCTCATGATTGAGTGTGAGACAGGAACAGGACACAACTCTCTCATTCGAGCTGGGTATGGTGGATGGCTTCTCTACACTGCTGCTTCAGCTGGGGATGTGGATTTTGTTCAAGAATTGTTGGGGAGAGACCCTTTTCTTGTGTTTGGAGAAGGAGAGTATGGTGTTACTGATATACTGTATGCTGCTGCTAGGAGCAAAAATTCTGAGGTATTCAAGCTCTTGCTTGATTCTGCTCTTTCAAGGAGTGGAGCAGAATTGGAGGAGGTTTTTAAGAGGGATATGATGAACAGGGCTATTCATGCTGCTGCCAGAGGTGGGAACTGGGAGATATTGAAGGAGCTTGTTGGAAGTGTTTCTGATGTTTTAGCCTATAGAGATACTGAAGGATTCACAGTCTTGCATACTGCAGCTGGTAGAGGGCAGGTTGAGGTGGTGAGAAATCTACTTGCATCATTTGATATTATCAACTTAACAGATGCTCAAGGGAACACAGCATTACATGTGGCTTCTTACAGGGGTTACTTACCTGTGGTAGAGACTCTGATTCATACATCTCCCTCTCTAGCATTGTTAACTAACCACTATGGAGATACTTTTCTTCATATGGCAGTGGCTGGTTTCAAGAGTCCTGGTTTCCGTAGACTAGACAAGCACACTGAGCTCATGAAGCAATTGGTGAGTGAGAAGATTGTGAACATACAGGACATTATCAATGTTAAGAACAATGATGGAAGAACATCACTTCATGTATCTGTGATTGATAACATCCAATGTGAGCTAGTGGAGTTATTGGTGTCTGTGCCATCAATTGATTTGAACATCCATGATGCTGATGGGTTGACCCCTTTGGATCTATTGAAGCAAAGACCAAGATCAGCATCTTCTGATATTTTAATCAAGCGGTTGATTTCTGCTGGAGGGATCTCAAGTCATGATCAAGATGTCGTGGAAACAAATAATACCCTTTTCACTCATATGAAAACCAATGTTATTGGAGGTAGTCCTGGGACTTCATTTAGAATACCAGATGCAGAGATATTCAGGTACACTGGCATTGAGAATGCATCTAATCATAGCAATTATGATCAAGCAAGTGTGGAATCATATCCATGCTCAAGTGAACTAAGCAATTCTGACTCAGCCAATTCCCCATACCACAACAAGTCTAATTCTGTCAATTTTGCTGCAAGACGCTTAAAGTTTCTTCTCAGATGGCCTGGGAGAAGAGAAACAAAAACAACTGCCTCAGAATTGGAAGATGATGATGATGATGATGATGATGATTCTCTTGATCCTTTCAGTTCAAGTAGAAACTTGGAAGAGTTTCCAATTCCATTAAGGCAGAGATACTCACAACCATGCTCCCTTCCAAACAACAAAAGAACACAATCCATGAGGAGTTTTCTTCCAAGTCCATCCTCTAGAATGAATTTCAGTGCAAGCTTAATGAAAGGTGTAATTCAGTTAAAGCCACAAGTACCTATTCTTGCTCATTCAACTACTAGTCCTTTTCAAGAATTATCTGTGGCTTCTCTTTCTTCAATCAATAAACAAAAGGGTGTTGATATTATGGGACCCTCTTGCTCCAATCGATCAATAGATGATAGCACACTTAAATTGAACTACAGACAGGGATCCTTCAATAAGAAACTGATGAATAGGTACTTTTCTTTTGGAGCACAAGACCTGGCTGTGGAAGATTCAAATAGCTGTTCAAGGTCAAATGGGAGCTACAAGCGTTTCAGCTCTTTGGTTGCCTAA 2004 0.4182 MPPSYFPLRWESTGEQWWYASPIDWAAANGLYDLVVELLHLDTNLLIKLTSLRRIRRLETVWDDEAQFEDVAKCRSQVARNLMIECETGTGHNSLIRAGYGGWLLYTAASAGDVDFVQELLGRDPFLVFGEGEYGVTDILYAAARSKNSEVFKLLLDSALSRSGAELEEVFKRDMMNRAIHAAARGGNWEILKELVGSVSDVLAYRDTEGFTVLHTAAGRGQVEVVRNLLASFDIINLTDAQGNTALHVASYRGYLPVVETLIHTSPSLALLTNHYGDTFLHMAVAGFKSPGFRRLDKHTELMKQLVSEKIVNIQDIINVKNNDGRTSLHVSVIDNIQCELVELLVSVPSIDLNIHDADGLTPLDLLKQRPRSASSDILIKRLISAGGISSHDQDVVETNNTLFTHMKTNVIGGSPGTSFRIPDAEIFRYTGIENASNHSNYDQASVESYPCSSELSNSDSANSPYHNKSNSVNFAARRLKFLLRWPGRRETKTTASELEDDDDDDDDDSLDPFSSSRNLEEFPIPLRQRYSQPCSLPNNKRTQSMRSFLPSPSSRMNFSASLMKGVIQLKPQVPILAHSTTSPFQELSVASLSSINKQKGVDIMGPSCSNRSIDDSTLKLNYRQGSFNKKLMNRYFSFGAQDLAVEDSNSCSRSNGSYKRFSSLVA. 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01743 667 SMART ANK_2a 324 355 IPR002110 GO:0005515
Seca6g01743 667 SMART ANK_2a 100 129 IPR002110 GO:0005515
Seca6g01743 667 SMART ANK_2a 175 204 IPR002110 GO:0005515
Seca6g01743 667 SMART ANK_2a 242 271 IPR002110 GO:0005515
Seca6g01743 667 SMART ANK_2a 276 316 IPR002110 GO:0005515
Seca6g01743 667 SMART ANK_2a 209 238 IPR002110 GO:0005515
Seca6g01743 667 SMART ANK_2a 134 164 IPR002110 GO:0005515
Seca6g01743 667 SMART ANK_2a 18 47 IPR002110 GO:0005515
Seca6g01743 667 SUPERFAMILY Ankyrin repeat 104 380 IPR036770 -
Seca6g01743 667 Pfam Ankyrin repeats (3 copies) 180 264 IPR002110 GO:0005515
Seca6g01743 667 ProSiteProfiles Ankyrin repeat profile. 242 274 IPR002110 GO:0005515
Seca6g01743 667 ProSiteProfiles Ankyrin repeat region circular profile. 209 230 - -
Seca6g01743 667 Gene3D - 13 403 IPR036770 -
Seca6g01743 667 MobiDBLite consensus disorder prediction 532 553 - -
Seca6g01743 667 MobiDBLite consensus disorder prediction 451 470 - -
Seca6g01743 667 ProSiteProfiles Ankyrin repeat region circular profile. 242 263 - -
Seca6g01743 667 PANTHER ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED 4 424 - -
Seca6g01743 667 ProSiteProfiles Ankyrin repeat profile. 209 241 IPR002110 GO:0005515
Seca6g01743 667 MobiDBLite consensus disorder prediction 492 553 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01743 Seca-Chr6 72205458 72208756 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01743 105 366 Miscellaneous Gene Families AT2G31820 31.086 1.57e-21 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01743 - - gmx:100796359 1017.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g01743 6 72205458 72208756 Seca6g01743 6 72205458 72208756 ECH
Seca6g01743 6 72205458 72208756 Seca12g05673 12 148279689 148283261 PCT