Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1006 ATGGCATCTAAGAAGATTAAGATTGGAATCAACGGATTTGGAAGGATTGGGCGTTTGGTTGCGAGAGTTGCTCTTCAGAGGGACGATGTTGAGCTGGTTGCAGTAAACGATCCTTTCATTTCCACTGATTACATGACATACATGTTCAAGTATGACACAGTTCATGGCCAGTGGAAGCATTTTGATATCAAGGTCAAGGACTCTAACACCCTTCTCTTTGGTCAAAACCCAGTTACCGTTTTCGGATTCAGGAACCCTGAGGAGATTCCATGGGGTGAAGCTGGTGCTGACTATGTTATTGAGTCAACCGGTGTGTTCACTGATAAGGACAAAGCCGCGGCACACTTGAAGGGTGGTGCAAAGAAGGTTGTGATCTCAGCCCCAAGTAAAGACGCACCAATGTTTGTTGTTGGTGTTAACGAGCATGAATACAAACCTGAACTTAACATTGTTTCCAACGCCAGCTGCACTACCAATTGTCTTGCTCCCCTCGCCAAGGTTATCAATGACCGATTTGGAATTGTTGAGGGTCTTATGACCACTGTCCACGCCATTACAGCTACTCAGAAGACCGTTGATGGTCCATCAAACAAGGATTGGAGGGGTGGAAGAGCTGCTTCCTTCAACATAATTCCCAGCAGCACTGGTGCTGCCAAGGCTGTGGGAAAAGTTCTTCCATCACTGAATGGTAAATTGACCGGAATGTCCTTCAGAGTTCCTACTGTGGATGTCTCAGTTGTTGATCTCACTGTCAGGCTAGAGAAGAAGGCAACCTATGCTGAGATCAAGAATGCTATCAAGGAGGAATCAGAAGGAAAATTGAAGGGTATTTTGGGTTACACCGAAGATGATGTTGTGTCCACTGACTTTCTTGGAGACAGCAGCTCCCGTGTGATTGACTTAATCGTGCACATTGCATCCGTGGCTTGA 930 0.4602 MASKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDTVHGQWKHFDIKVKDSNTLLFGQNPVTVFGFRNPEEIPWGEAGADYVIESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHAITATQKTVDGPSNKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMSFRVPTVDVSVVDLTVRLEKKATYAEIKNAIKEESEGKLKGILGYTEDDVVSTDFLGDSSSRVIDLIVHIASVA* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1006 309 Gene3D - 6 154 - -
Ahy20g1006 309 PIRSF GAPDH 4 307 IPR020831 GO:0016620
Ahy20g1006 309 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 3 306 IPR020831 GO:0016620
Ahy20g1006 309 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 155 303 - -
Ahy20g1006 309 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 3 306 - -
Ahy20g1006 309 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 161 300 IPR020829 GO:0016620
Ahy20g1006 309 TIGRFAM GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 7 300 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
Ahy20g1006 309 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 5 172 IPR036291 -
Ahy20g1006 309 SMART gp_dh_n_7 6 156 IPR020828 GO:0051287
Ahy20g1006 309 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 274 289 IPR020831 GO:0016620
Ahy20g1006 309 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 115 128 IPR020831 GO:0016620
Ahy20g1006 309 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 177 193 IPR020831 GO:0016620
Ahy20g1006 309 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 150 168 IPR020831 GO:0016620
Ahy20g1006 309 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 234 251 IPR020831 GO:0016620
Ahy20g1006 309 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 6 109 IPR020828 GO:0051287
Ahy20g1006 309 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 154 161 IPR020830 GO:0016620
Ahy20g1006 309 Gene3D Dihydrodipicolinate Reductase; domain 2 155 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1006 Ahy-Chr20 14749999 14753603 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1006 K00134 - gmx:100782924 548.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1006 20 14749999 14753603 Ahy20g1006 20 14749999 14753603 ECH
Ahy20g1006 20 14749999 14753603 Ahy18g2992 18 135055749 135058904 ECH
Ahy20g1006 20 14749999 14753603 Ahy10g0721 10 8233697 8237039 hybridization