Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02480 ATGCCTCTTCGGTCGTATTTTCCTCTTCGTTGGGAAAGCACAGGCCAACAATGGTGGTACGCATCACCAATCGATTTAGCAGCATCAAACGGCCACTACGATCTCGTCATCGAGCTTCTCCACCTCGACACAAACCTCCTCATCAAACTCACTTCCCTCCAAAGAATCCGCCGCCTCGAAACTCTGTGGGACGACGACGAGTCACAGTTCCACGGCGTCGCCAAATGCCGCTCCCACGTCGCCAGAAAACTCATGCTCGAATGCGAAACCGGAAACAGAAACTCTCTTGTTAAAGCTGGATACGGTGGATGGCTTCTTTACACTGCTGCTTCTGCTGGTGACGTGGATTTTGTTACTGATTTGTTGACAAGAGATGGTTCTCTTGTTTTTGGTGAAGGTGAGTATGGTGTTACGGATATTTTGTATGCTGCTGCCAGGAGTAAGAATTGTCAGGTTTTTAAGATTGTGTTTGATTATGCAATGTTGAAAAATAGTGGACGAGAGTTGGATTTGGATGAGGTTTTTAAGATTGATATCGTTAATAGACTTGTTCATGCCGCGGCTAGAGGTGGTAATTGGGAGATACTGAATCAGTTTCTTGAAAGTGTTCATGACGTTTTAGTTTATAGAGATTCTTATGGATGCACTGTTTTGCATTCAGCCGCGGCTACCGGACAAGTTGAGGTGGTGAGAAAGCTACTTGAATCTTTTGATATTATCAACTTAACCGACGATCGCGGGAACACGGCGTTACATGTAGCTTGTTACAGGGGTTACTTACCTGTGGTAGAGATTCTAATAGATGCATCTCCTTCACTGGCACTGTTAACCAACCATGATGGTGATACTTTACTTCATTTGGCAGTGGCTGGTTTTAAGAGTCCTGGTTTTTGTAGACTAGACAAGCATGCCGAACTCATGAAGCAATTGGTAAGTGAAAAGATTGTGAAGACACGAGATATCGTTAATGTTAAGAACAACGATGGAAGAACTGCTCTTCATGTATCCGTGATTGATAACATTCAAGTTGAGGTAGTGGAATTGTTGATGTCTTTGCCTTCAATTGATTTGAACATTTGTGATGTTGACGGGCTGGCCCCTTTAGATCTTTTGAAGCAAAGGTCACGATCGACGTCTTCCGATTTTTTAATCAAAAGGTTGATTTCTGCGGGAGGGGTGAATTGTGAACTTATGTCGAACAATTCTGAATCAAGTTGTACTGTGAAGCCGCTGCAGAAGATTCAAATCGGTGTAAATGGAACCAGTCCCGGTACTTCATTTAGAATACCAGATGCAGAGATATTCCTGTACACTGGCATTGAGAATGCATCTGATGCCAATTATGTCCAAACAAGTCCTGAATCACATTCCTGCTCAAGCGAACTAAGTAACAACTCTGATGGTGCCAATTCTCCATATAACAACAAATCTAGTTCTGTTAATAATGCTGCAAGACGCTTAAAGTTTCTTCTAAGGTGGCGTAGGAGAAAAGACCGAAAAGCAGCTTTCTCAGATTTGGAAGATGATGATTCTCTTGATCCTTTTAGTTCAAGTAGAAACACGGATGAGTTTTCAATCCCATTAAGGCAAAGATACTCACACTCATGTTCCTCCCTTAGAACACATTCTATAAGGAGTTTTCTTCCAAGTCCATCTTCCAAAATGAATTTCGCTACAGGCCTCATCCAAGGAGTAATTCAGCTAAACCCACACGTTTCTCTTCCTGCTCATTCAACTCCTAATCTTTTTCAAGAATTGTCAGTGGTTTCTCTTTCTTCGATCAATAAACAAAAGAATCTTGATATAATTGGACCCTCTTGCTCAAATCGATTGGACTACAAACAAGATTCTTTCAATAAGAAATTGATGAATCCGTATCTTTCTTTTGGAGCACAAGGCCTGATGAACATCGAAGATTCAAATAGCCGTGAATCAAATCGGAGTTATAAGCGTTTCAGTTCGTTAGTTGCATAG 1974 0.4174 MPLRSYFPLRWESTGQQWWYASPIDLAASNGHYDLVIELLHLDTNLLIKLTSLQRIRRLETLWDDDESQFHGVAKCRSHVARKLMLECETGNRNSLVKAGYGGWLLYTAASAGDVDFVTDLLTRDGSLVFGEGEYGVTDILYAAARSKNCQVFKIVFDYAMLKNSGRELDLDEVFKIDIVNRLVHAAARGGNWEILNQFLESVHDVLVYRDSYGCTVLHSAAATGQVEVVRKLLESFDIINLTDDRGNTALHVACYRGYLPVVEILIDASPSLALLTNHDGDTLLHLAVAGFKSPGFCRLDKHAELMKQLVSEKIVKTRDIVNVKNNDGRTALHVSVIDNIQVEVVELLMSLPSIDLNICDVDGLAPLDLLKQRSRSTSSDFLIKRLISAGGVNCELMSNNSESSCTVKPLQKIQIGVNGTSPGTSFRIPDAEIFLYTGIENASDANYVQTSPESHSCSSELSNNSDGANSPYNNKSSSVNNAARRLKFLLRWRRRKDRKAAFSDLEDDDSLDPFSSSRNTDEFSIPLRQRYSHSCSSLRTHSIRSFLPSPSSKMNFATGLIQGVIQLNPHVSLPAHSTPNLFQELSVVSLSSINKQKNLDIIGPSCSNRLDYKQDSFNKKLMNPYLSFGAQGLMNIEDSNSRESNRSYKRFSSLVA 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02480 657 ProSiteProfiles Ankyrin repeat profile. 213 245 IPR002110 GO:0005515
Vifa2g02480 657 Pfam Ankyrin repeats (3 copies) 185 269 IPR002110 GO:0005515
Vifa2g02480 657 ProSiteProfiles Ankyrin repeat region circular profile. 246 268 - -
Vifa2g02480 657 SUPERFAMILY Ankyrin repeat 105 384 IPR036770 -
Vifa2g02480 657 ProSiteProfiles Ankyrin repeat region circular profile. 213 235 - -
Vifa2g02480 657 MobiDBLite consensus disorder prediction 448 479 - -
Vifa2g02480 657 SMART ANK_2a 328 359 IPR002110 GO:0005515
Vifa2g02480 657 SMART ANK_2a 246 275 IPR002110 GO:0005515
Vifa2g02480 657 SMART ANK_2a 101 130 IPR002110 GO:0005515
Vifa2g02480 657 SMART ANK_2a 213 242 IPR002110 GO:0005515
Vifa2g02480 657 SMART ANK_2a 280 319 IPR002110 GO:0005515
Vifa2g02480 657 SMART ANK_2a 178 208 IPR002110 GO:0005515
Vifa2g02480 657 SMART ANK_2a 19 48 IPR002110 GO:0005515
Vifa2g02480 657 ProSiteProfiles Ankyrin repeat profile. 246 278 IPR002110 GO:0005515
Vifa2g02480 657 PANTHER ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED 2 391 - -
Vifa2g02480 657 Gene3D - 12 413 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02480 Vifa-Chr2 650395393 650397542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02480 106 370 Miscellaneous Gene Families AT2G31820 31.250 6.90e-21 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02480 - - gmx:100796359 823.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02480 2 650395393 650397542 Vifa2g02480 2 650395393 650397542 ECH
Vifa2g02480 2 650395393 650397542 Vifa2g02480 2 650395393 650397542 PCT