Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1333 ATGGCACTGGTGTATTTCCCCTTTCGCAGTAAAGCCTATGGGCATTGCTGGCGTGCTTTTTCTTCTTTATGTTCGCCGTCCCCATTTGTGGGAACTGGTATTGGTAATGGAGAAGAGTGTATTCGGTCTCAAATCGATATTATTGTATCTAGAATTCGTGAGGGAAGTAGTGATGATGAGGTTTTTAAGTCTCTTGTGCATGATGAAGCTTGTAATGCTATACCCATGTCTCAAAACCTTGTTGATGTGTTGCTTCATCGATTTAAAGATGATTGGAAGTCTGCATTGGGGTTGTTTAGATGGGCGGAGTCGCGTTTGGGGTATGAACATGCACCTGAAGCATATGATATGATGGTTGATATATTGGGGAAATTGAAGCAAGTGGATAAGATGAGAGCACTGATGGAGGAAATGCGTCAGGGCAATCTTGTTAGGCTTAGTACTGTAGCTAAGGCTATGAGAAGGCTGGCGGGTGCTGGGGAATGGGAGGATGCGGTGAGGGTGTTTGATGATTTGGGGAACTTTGAATTGGAGAAGAACACAGAATCCATGAACTTATTGCTTGATACCCTTTGTAAAGAGAGGAAAGTTGAGCAGGCCCGTGCAATCTTCTTGGAACTCAAACCACACATTTCCCCCAACACCCACACATTTAACATTTTTATTCATGGTTGGTGTAAAGCCAATCGGGTAGATGAAGCTGAGTGGACAATCCAAGAGATGAAAGGACATGGTTGCCGCCCTTGTGTAATTAGCTACTCAACAATTATTCAATCCTATTGCCGCCAAAGCAATTTCAGAAAGGTGTATGAGCTTCTAGATGATATGCAAGCTCAAGGGTGTGCGCCAAATGTTGTCACTTACACCACTATCATGTGTTCGCTGACAAAGGTGGAGCAGTTTGAAGAAGCCTTACAGATAGCTGAGAGAATGAGATCAGTTGGATGTAAACCTGATACACTTTTCTACAATGCGTTGATCCATACACTTGGGAGAGCTGGTCAATTAAGAGAGGCTGTTCGTGTTTTTGAGGTGGAGATGCCCAAGACTGGTGTTCCTCCAAATACGTCTACCTACAATTCAATGATTGCTATGTTCTGTCACCACTCTCAAGAACAAAAGGCCTTGAACCTCCTCAGAGAAATTGAAAATTCAACTTTTTGTAAGCCTGATATTCAGACTTATTACCCAGTGCTTAAGTCATGCTTCAAAACTGGAAAGATTGATAGTTTGAGCAATTTTCTGGATGACATGGTTAATAAGCATCATCTCAGTCTAGATGTCTCGGCCTACACTCTTCTAATTCATGGGCTTTGTAGAGCAAATAAATGTGAGTGGGGTTATAACCTCTTTGAGGAGATGGTAGGTAAAGCAATAACACCTAGATATAAGACATGTGCTTTGCTTTTGGATGAAATCAAACAGAAGAATATGCATGATGCCGCTGAGAGGATTGAAGTTTTCATGAAGCAAATGAAAACCTCCGAGTAA 1491 0.4212 MALVYFPFRSKAYGHCWRAFSSLCSPSPFVGTGIGNGEECIRSQIDIIVSRIREGSSDDEVFKSLVHDEACNAIPMSQNLVDVLLHRFKDDWKSALGLFRWAESRLGYEHAPEAYDMMVDILGKLKQVDKMRALMEEMRQGNLVRLSTVAKAMRRLAGAGEWEDAVRVFDDLGNFELEKNTESMNLLLDTLCKERKVEQARAIFLELKPHISPNTHTFNIFIHGWCKANRVDEAEWTIQEMKGHGCRPCVISYSTIIQSYCRQSNFRKVYELLDDMQAQGCAPNVVTYTTIMCSLTKVEQFEEALQIAERMRSVGCKPDTLFYNALIHTLGRAGQLREAVRVFEVEMPKTGVPPNTSTYNSMIAMFCHHSQEQKALNLLREIENSTFCKPDIQTYYPVLKSCFKTGKIDSLSNFLDDMVNKHHLSLDVSAYTLLIHGLCRANKCEWGYNLFEEMVGKAITPRYKTCALLLDEIKQKNMHDAAERIEVFMKQMKTSE* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1333 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 427 461 IPR002885 -
Vvi1g1333 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 319 354 IPR002885 -
Vvi1g1333 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 355 389 IPR002885 -
Vvi1g1333 496 Pfam PPR repeat 183 208 IPR002885 -
Vvi1g1333 496 Pfam PPR repeat 114 140 IPR002885 -
Vvi1g1333 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 249 283 IPR002885 -
Vvi1g1333 496 PANTHER MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 212 486 - -
Vvi1g1333 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 214 248 IPR002885 -
Vvi1g1333 496 Pfam PPR repeat 424 455 IPR002885 -
Vvi1g1333 496 Pfam PPR repeat 211 241 IPR002885 -
Vvi1g1333 496 Gene3D Tetratricopeptide repeat domain 278 346 IPR011990 GO:0005515
Vvi1g1333 496 Gene3D Tetratricopeptide repeat domain 51 209 IPR011990 GO:0005515
Vvi1g1333 496 Gene3D Tetratricopeptide repeat domain 210 277 IPR011990 GO:0005515
Vvi1g1333 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 284 318 IPR002885 -
Vvi1g1333 496 Gene3D Tetratricopeptide repeat domain 347 496 IPR011990 GO:0005515
Vvi1g1333 496 Pfam PPR repeat family 248 295 IPR002885 -
Vvi1g1333 496 Pfam PPR repeat family 318 368 IPR002885 -
Vvi1g1333 496 NCBIfam pentatricopeptide repeat 251 285 IPR002885 -
Vvi1g1333 496 NCBIfam pentatricopeptide repeat 114 142 IPR002885 -
Vvi1g1333 496 NCBIfam pentatricopeptide repeat 216 248 IPR002885 -
Vvi1g1333 496 NCBIfam pentatricopeptide repeat 286 320 IPR002885 -
Vvi1g1333 496 NCBIfam pentatricopeptide repeat 430 457 IPR002885 -
Vvi1g1333 496 NCBIfam pentatricopeptide repeat 358 391 IPR002885 -
Vvi1g1333 496 NCBIfam pentatricopeptide repeat 323 356 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1333 Vvi-Chr1 19548426 19549916 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1333 187 496 Miscellaneous Gene Families AT4G11690 26.426 3.22e-31 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1333 - - vvi:100264769 1016.14