Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1336 ATGATCACCGGAGGCAAATCCTTGCAGAAGTTCCATAACACAGTCTGTCCCAGCTGCAAGCTAATCAAGACCGCCTACTTCATCATGATTTTTGCTTCTTGTCACTTTGTTCTATCCCATTTGCCCAATTTCAAATTCATTGCTGGTGTCTCATTTGCTGCTGCAATCATGTCCTTAACTTACTCAACTATTGCCTGGACAGCTTCGGTTCATAAAGGTGTCCAACCAGATGTGCAATATACATACACAGCTTCGACCACAACTGGAAGAGTCTTCAACTTCTTTAGCGCCTTGGGTGACGTAGCATTTGCCTATGCTGGTCACAATGTGGTGTTGGAGATCCAAGCAACAATTCCCTCCACTCCTGAGAAGCCTTCCAAGAGACCCATGTGGAAAGGAGTGATTTTCGCTTATATTGTTGTTGCCTTGTGCTACTTCCCTGTCGCTCTGATTGGATACTGGATGTTTGGGAACAGTGTTGCTGACAATATCCTTATCACACTGGAGAAACCCCGCTGGCTTATAGCAGCAGCCAACCTGTTTGTTTTCATCCATGTTATTGGAAGTTACCAGATATATGCGATGCCAGTGTTTGACATGTTGGAAACATTCTTGGTGAAGAAACTGAAATTCACACCATGTTTCAGGCTTCGTCTTATTACCCGCACTCTATACGTTGCTTTTACAATGTTTATAGGCATGTTGATCCCTTTCTTTGGTAGCCTGCTTGGGTTCTTAGGAGGATTGGTGTTTGCACCAACGACCTACTTTCTCCCCTGTATCATGTGGCTTGCAATTTACAAACCCAAAAGGTTTAGCCTAACATGGTTTACAAATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATTTTTGGCAGGGCAAGTTGACAAGGGCTAA 972 0.393 MITGGKSLQKFHNTVCPSCKLIKTAYFIMIFASCHFVLSHLPNFKFIAGVSFAAAIMSLTYSTIAWTASVHKGVQPDVQYTYTASTTTGRVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKRPMWKGVIFAYIVVALCYFPVALIGYWMFGNSVADNILITLEKPRWLIAAANLFVFIHVIGSYQIYAMPVFDMLETFLVKKLKFTPCFRLRLITRTLYVAFTMFIGMLIPFFGSLLGFLGGLVFAPTTYFLPCIMWLAIYKPKRFSLTWFTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFLAGQVDKG* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1336 323 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 34 - -
Vvi1g1336 323 PANTHER OS05G0424000 PROTEIN-RELATED 1 276 - -
Vvi1g1336 323 Pfam Transmembrane amino acid transporter protein 1 278 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1336 Vvi-Chr1 19574984 19576375 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1336 1 279 Organic Solute Cotransporters AT5G40780 74.910 5.97e-155 438
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1336 - - vvi:100247632 534.643