Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu10g0469 . . . Aed2g1729 . . . . . . . . . . . . . . . . . . . . . Gso3g0916 . . . . . . . . . . . . . . . . . . . . . . Pste7g00239 . . . . . . . . . . . . . . .
Pvu10g0470 . . . . . . . . . . . . . . . . . . . . . . . Gma07g01056 Gso7g0988 . . . . . . . . . . . . . . . . . . . . Phco1g01927 . Psa4g5142 . . . . . . . . . . . . Vimu9g01761 . . Vra9g0754
Pvu10g0471 . . . . . . . . . . . . . . . . . . . . . . . Gma07g01055 Gso7g0987 . . . . . . . . . . . . . . . . . . . . . . Psa4g5143 . . . . . . . . . . . . . . . Vra9g0753
Pvu10g0472 . . Adu09g00961 Aed2g1733 Aev09g0700 Ahy19g0685 Ahy9g0558 Aip09g01303 . Amo19g0636 . Apr10g0465 Arst9g00789 Bach6g00960 . Bva02g01528 Car07g03356 Cca01g01531 . . . . Gma03g01019 . . Gso3g0918 Lal14g0126 . Lal19g0030 Lan12g0090 Lan1g0931 . . . . . . . Lja3g4589 Mal5g0148 Mepo1g04667 . . Mtr8g0115 . Phco1g01929 . . Pste7g00237 Pumo7g01967 Rops4g00542 Seca4g10203 Spst4g01236 Ssu2g0800 . . Trre15g00121 Tsu08g00100 . Vifa4g00097 . . Vivi7g03357 .
Pvu10g0473 . . Adu09g00590 Aed2g1734 Aev09g0466 Ahy19g0686 Ahy9g0561 Aip09g00773 . Amo19g0638 . Apr10g0466 Arst9g00790 Bach6g00956 . Bva02g01534 . Cca01g01534 . . . . Gma03g01020 . . Gso3g0919 . . . . . . . . . . . . Lja3g4590 Mal5g0145 Mepo1g04669 . . Mtr8g0114 . Phco1g01930 . . Pste7g00235 Pumo7g01966 Rops4g00543 Seca4g10202 Spst4g01237 Ssu2g0801 . . Trre15g00120 Tsu08g00099 . Vifa4g00095 . . Vivi7g03356 .
Pvu10g0474 . . Adu09g00591 Aed2g1735 Aev09g0465 Ahy19g0687 Ahy9g0563 . . Amo19g0639 . Apr10g0468 . . . Bva02g01535 . Cca01g01537 . . . . Gma03g01021 . . Gso3g0921 Lal14g0125 . . Lan12g0091 . . . . . . . . Lja3g4591 . . . . . . Phco1g01931 . . . Pumo7g01964 Rops4g00544 . Spst4g01238 Ssu2g0802 . . . . . . . . . .
Pvu10g0475 . . Adu09g00592 Aed2g1736 . Ahy19g0688 Ahy9g0564 Aip09g00774 . . . Apr10g0469 . . . . . . . . . . . . . . Lal14g0123 . . Lan12g0092 . . . . . . . . . . . . . . . . . . . . . . . Ssu2g0803 . . . . . . . . . .
Pvu10g0476 . . . . . . . . . . . Apr10g0470 . Bach6g00954 . Bva02g01536 . Cca01g01538 . . . . . . . . . . Lal19g0026 . Lan1g0933 . . . . . . . Lja3g4592 Mal5g0140 Mepo1g04670 . . Mtr8g0113 . . . . Pste7g00231 Pumo7g01962 Rops4g00546 Seca4g10199 . . . . . . . Vifa4g00094 Vimu9g01752 . Vivi7g03355 Vra9g0748
Pvu10g0477 . . . . . . . . . . . . . . . . Car07g03359 Cca01g01539 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0478 . . . Aed2g1737 Aev09g0462 . . . . . . . . . . . Car07g03362 . . . . . Gma03g01023 . . Gso3g0924 . . . . . . . . . . . . . . . . . . . Phco1g01935 . . . . . . Spst4g01240 Ssu2g0804 . . . . . . . . Vivi7g03354 .
   
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Select Species Gene Chromosome Start End Strand
Pvu Pvu10g0469 Chr10 6824495 6827168 -
Aed Aed2g1729 Chr2 21904016 21906535 -
Gso Gso3g0916 Chr3 32755479 32756628 -
Pste Pste7g00239 Chr7 2225992 2227349 +
Pvu Pvu10g0470 Chr10 6873961 6877771 +
Gma Gma07g01056 Chr07 12927082 12938100 -
Gso Gso7g0988 Chr7 12702404 12708386 -
Phco Phco1g01927 Chr1 58919338 58924007 +
Psa Psa4g5142 Chr4 443201887 443205813 +
Vimu Vimu9g01761 Chr9 26815493 26825193 -
Vra Vra9g0754 Chr9 8633932 8639426 -
Pvu Pvu10g0471 Chr10 6884394 6886415 -
Gma Gma07g01055 Chr07 12920293 12922470 +
Gso Gso7g0987 Chr7 12690486 12692702 +
Psa Psa4g5143 Chr4 443225311 443227213 -
Vra Vra9g0753 Chr9 8630349 8632446 +
Pvu Pvu10g0472 Chr10 6898401 6902401 -
Adu Adu09g00961 Chr09 16336467 16338206 -
Aed Aed2g1733 Chr2 21925562 21929313 -
Aev Aev09g0700 Chr09 6483065 6485119 +
Ahy Ahy19g0685 Chr19 9440008 9443502 -
Ahy Ahy9g0558 Chr9 7847159 7850179 -
Aip Aip09g01303 Chr09 21764348 21767148 -
Amo Amo19g0636 Chr19 9872680 9875762 -
Apr Apr10g0465 Chr10 11415052 11419163 -
Arst Arst9g00789 Chr9 7553458 7556498 -
Bach Bach6g00960 Chr6 7805408 7808004 +
Bva Bva02g01528 Chr02 18275910 18278947 -
Car Car07g03356 Chr07 61610885 61611721 -
Cca Cca01g01531 Chr01 33492414 33495020 -
Gma Gma03g01019 Chr03 34205133 34209135 -
Gso Gso3g0918 Chr3 32773791 32777928 -
Lal Lal14g0126 Chr14 1259558 1264571 -
Lal Lal19g0030 Chr19 228541 230805 -
Lan Lan12g0090 Chr12 989765 993679 +
Lan Lan1g0931 Chr1 20000597 20005671 +
Lja Lja3g4589 Chr3 87730407 87734355 -
Mal Mal5g0148 Chr5 2753782 2757511 +
Mepo Mepo1g04667 Chr1 54519284 54523532 -
Mtr Mtr8g0115 Chr8 1341190 1348777 +
Phco Phco1g01929 Chr1 58932017 58935623 -
Pste Pste7g00237 Chr7 2220849 2223865 +
Pumo Pumo7g01967 Chr7 53008766 53011748 +
Rops Rops4g00542 Chr4 14947955 14952614 -
Seca Seca4g10203 Chr4 236530981 236535203 +
Spst Spst4g01236 Chr4 47206028 47209181 -
Ssu Ssu2g0800 Chr2 41716986 41721551 -
Trre Trre15g00121 Chr15 844315 846752 +
Tsu Tsu08g00100 Chr08 928689 932626 +
Vifa Vifa4g00097 Chr4 11790023 11790859 +
Vivi Vivi7g03357 Chr7 99170070 99172420 +
Pvu Pvu10g0473 Chr10 6903806 6925958 -
Adu Adu09g00590 Chr09 7529042 7549047 -
Aed Aed2g1734 Chr2 21931779 21944586 -
Aev Aev09g0466 Chr09 4095830 4105555 +
Ahy Ahy19g0686 Chr19 9450230 9461150 -
Ahy Ahy9g0561 Chr9 7862846 7876771 -
Aip Aip09g00773 Chr09 9782858 9794242 -
Amo Amo19g0638 Chr19 9888409 9899275 -
Apr Apr10g0466 Chr10 11420832 11443078 -
Arst Arst9g00790 Chr9 7564014 7577408 -
Bach Bach6g00956 Chr6 7687092 7694870 +
Bva Bva02g01534 Chr02 18319372 18326729 -
Cca Cca01g01534 Chr01 33535402 33571288 -
Gma Gma03g01020 Chr03 34211029 34227090 -
Gso Gso3g0919 Chr3 32779755 32795807 -
Lja Lja3g4590 Chr3 87735180 87746248 -
Mal Mal5g0145 Chr5 2655024 2657919 +
Mepo Mepo1g04669 Chr1 54534561 54538566 -
Mtr Mtr8g0114 Chr8 1322731 1332150 +
Phco Phco1g01930 Chr1 58936818 58951844 -
Pste Pste7g00235 Chr7 2198572 2219472 +
Pumo Pumo7g01966 Chr7 52993729 53001751 +
Rops Rops4g00543 Chr4 14954577 14971723 -
Seca Seca4g10202 Chr4 236503216 236529446 +
Spst Spst4g01237 Chr4 47210355 47245611 -
Ssu Ssu2g0801 Chr2 41728101 41748829 -
Trre Trre15g00120 Chr15 830925 841247 +
Tsu Tsu08g00099 Chr08 917148 927222 +
Vifa Vifa4g00095 Chr4 11758027 11765866 +
Vivi Vivi7g03356 Chr7 99160442 99168234 +
Pvu Pvu10g0474 Chr10 6933195 6935672 +
Adu Adu09g00591 Chr09 7550322 7551721 +
Aed Aed2g1735 Chr2 21946447 21947958 +
Aev Aev09g0465 Chr09 4092340 4093935 -
Ahy Ahy19g0687 Chr19 9476710 9478581 +
Ahy Ahy9g0563 Chr9 7884713 7886602 +
Amo Amo19g0639 Chr19 9914916 9916722 +
Apr Apr10g0468 Chr10 11463526 11465177 +
Bva Bva02g01535 Chr02 18326973 18329189 +
Cca Cca01g01537 Chr01 33741927 33743595 +
Gma Gma03g01021 Chr03 34236666 34239570 +
Gso Gso3g0921 Chr3 32805351 32808185 +
Lal Lal14g0125 Chr14 1253642 1255279 -
Lan Lan12g0091 Chr12 1000187 1002958 +
Lja Lja3g4591 Chr3 87746266 87747447 +
Phco Phco1g01931 Chr1 58954347 58955840 +
Pumo Pumo7g01964 Chr7 52980537 52983298 -
Rops Rops4g00544 Chr4 14983565 14984776 +
Spst Spst4g01238 Chr4 47251061 47252596 +
Ssu Ssu2g0802 Chr2 41754673 41755914 +
Pvu Pvu10g0475 Chr10 6939602 6942032 +
Adu Adu09g00592 Chr09 7553293 7559238 +
Aed Aed2g1736 Chr2 21950276 21952366 +
Ahy Ahy19g0688 Chr19 9478735 9482494 +
Ahy Ahy9g0564 Chr9 7886745 7890477 +
Aip Aip09g00774 Chr09 9809821 9818187 +
Apr Apr10g0469 Chr10 11482113 11484518 +
Lal Lal14g0123 Chr14 1247365 1249389 -
Lan Lan12g0092 Chr12 1006967 1009431 +
Ssu Ssu2g0803 Chr2 41778021 41780537 +
Pvu Pvu10g0476 Chr10 6943458 6948353 +
Apr Apr10g0470 Chr10 11487379 11493281 +
Bach Bach6g00954 Chr6 7678769 7683800 -
Bva Bva02g01536 Chr02 18329927 18334691 +
Cca Cca01g01538 Chr01 33766700 33772224 +
Lal Lal19g0026 Chr19 194019 197504 -
Lan Lan1g0933 Chr1 20026983 20031018 +
Lja Lja3g4592 Chr3 87756465 87762985 +
Mal Mal5g0140 Chr5 2613462 2616922 -
Mepo Mepo1g04670 Chr1 54538774 54544165 +
Mtr Mtr8g0113 Chr8 1317255 1322694 -
Pste Pste7g00231 Chr7 2169571 2175538 -
Pumo Pumo7g01962 Chr7 52967252 52972398 -
Rops Rops4g00546 Chr4 14992642 14997343 +
Seca Seca4g10199 Chr4 236473472 236478943 -
Vifa Vifa4g00094 Chr4 11755212 11757836 -
Vimu Vimu9g01752 Chr9 26747771 26752194 +
Vivi Vivi7g03355 Chr7 99155169 99160401 -
Vra Vra9g0748 Chr9 8555566 8561558 +
Pvu Pvu10g0477 Chr10 6949244 6953123 +
Car Car07g03359 Chr07 61616136 61619862 +
Cca Cca01g01539 Chr01 33774086 33776844 +
Pvu Pvu10g0478 Chr10 6955267 6961294 +
Aed Aed2g1737 Chr2 21952835 21958291 +
Aev Aev09g0462 Chr09 4076035 4082902 -
Car Car07g03362 Chr07 61646527 61650571 +
Gma Gma03g01023 Chr03 34277545 34281230 +
Gso Gso3g0924 Chr3 32845122 32850365 +
Phco Phco1g01935 Chr1 58967027 58976659 +
Spst Spst4g01240 Chr4 47267554 47277024 +
Ssu Ssu2g0804 Chr2 41802964 41808277 +
Vivi Vivi7g03354 Chr7 99155169 99160403 -