Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g00789 ATGCTCCTTCAACACTTTGTGTCTCTCAAAAACCCTAACACTCCTCACATTCTCTCCTCTTCCCTCTCTTATTCTTCGGCAACACTTCCCTCCGTCTTCAACCCTTCTTCTTCCACCTTCCTTCACGCGCAACTCACGTGTCCTCGCACCCTCTCTGTCACGTGCACTGCCTCCGACGCCCAAACCGTGGGTTACAGGCGAAAACCCGCTGAAGCGTGGAAAGCTATATGCAAGAGGATATCGTTGATTGAGAAGCCGGAAGTGGATTCTTCTACTGTGTTGAATCAGTGGGAGAGTAAAGGAAAATGGATCAAGAAATTGGATGTTTGTAGAGTCATCAAAGACTTGAGAAAATTCAACAAGCATAGAAGGGCACTTGAGGTATATGATTGGATGGACAGAAGACCAGAGAGATATAGAATAACTCCGAGTGACATTGCAATTCAGTTAGATCTAATTGCCAAAGTTCATGGAGCTCCTAGTGCAGAAGCAGTTTTTCTGAGGCTGCCTGATAAGGCAAAAAACAAGAGGACATATGGAGCCCTTTTGAATATATATGTGCAGTTTCAGTTGAAGGAAAAGGCAGAATCTTTATTCGACACAATGAAGAGTAAAGGTCATGCAATTGAATCATTAACATTTAATGTAATGATGACTCTGTACATGAACTTCAAGGATTATGATCAGGTTGATATGTTGGTTTCAGAAATGATTAAGAACAACATCAAGCTGGATGCCTATTCATATAATATCTGGCTATCTTCTTGTGGATCTCAAGGATTAACAGAAAAGATGGAACAAGTGTTTGATCAGATGACAAAGGATCCTAACGTAGTTCCTAACTGTTCCACATTCACGACAATGGCTACAACTTACATTAAGATGAATCTGTTCGAAAAAGCAGAAGAGTGCATAAGAAACGCTGAGAGCAAAATCGAAGGTCGGGACAGAATACCTTATCATTATATCCTAAGTTTATATGGAAGTATTGGAAAGAAAGATGAAGTTTATCGCGTGTGGAATAACTATAAATTAAGTTTTCCCAGTATACCAAACTTGGGATACCATTCCGTTATTTCTTCCCTGGTTAGAATGGATGATATTGAGGGTGCAGAAAATCTCTATGAGCAATGGGTTTCAGCAAAAGCATTTTATGATCCTAGAATAGGAAACCTTCTCATAGGTTGGTATGTTAAGAATGGCAATACAGATAAAGCTATTAGGTTCTTTGACAGGATGAAAGAAGATGGTGGAGTTCCAAATCCAAGTACTTGGGAGCTTCTATCTATGTTGCATATTGCAGATAAAAGGGTAACTGAATCTCTGTCTTGCTTGAAAGAAGCTTTTGTGGCTAAAGGTTCAAAAAGTTGGAGACCAAATGCTACAAACTTGGACGCGTTCTTTAAGCTTTGTGAGGAACAAGGAGACATGGCATGCGCCAATGATTTGATCGAGTTGTTGAAGAAATCAGAATTTGTTAAAGATGAAGTTTATGCATCAATGATTGGCTTATCTGATGGTACCATTGGCAAAGGTGAATGTTCAAGTAAGATTGATGCAGTAGATAAAACTATGGATGATAACTCGCAAATGTTGAACCAAATGGAAAGTAGTTTTTGA 1620 0.3944 MLLQHFVSLKNPNTPHILSSSLSYSSATLPSVFNPSSSTFLHAQLTCPRTLSVTCTASDAQTVGYRRKPAEAWKAICKRISLIEKPEVDSSTVLNQWESKGKWIKKLDVCRVIKDLRKFNKHRRALEVYDWMDRRPERYRITPSDIAIQLDLIAKVHGAPSAEAVFLRLPDKAKNKRTYGALLNIYVQFQLKEKAESLFDTMKSKGHAIESLTFNVMMTLYMNFKDYDQVDMLVSEMIKNNIKLDAYSYNIWLSSCGSQGLTEKMEQVFDQMTKDPNVVPNCSTFTTMATTYIKMNLFEKAEECIRNAESKIEGRDRIPYHYILSLYGSIGKKDEVYRVWNNYKLSFPSIPNLGYHSVISSLVRMDDIEGAENLYEQWVSAKAFYDPRIGNLLIGWYVKNGNTDKAIRFFDRMKEDGGVPNPSTWELLSMLHIADKRVTESLSCLKEAFVAKGSKSWRPNATNLDAFFKLCEEQGDMACANDLIELLKKSEFVKDEVYASMIGLSDGTIGKGECSSKIDAVDKTMDDNSQMLNQMESSF 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g00789 539 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 386 420 IPR002885 -
Arst9g00789 539 NCBIfam pentatricopeptide repeat 391 421 IPR002885 -
Arst9g00789 539 NCBIfam pentatricopeptide repeat 213 246 IPR002885 -
Arst9g00789 539 NCBIfam pentatricopeptide repeat 247 282 IPR002885 -
Arst9g00789 539 Gene3D Tetratricopeptide repeat domain 352 537 IPR011990 GO:0005515
Arst9g00789 539 Gene3D Tetratricopeptide repeat domain 74 239 IPR011990 GO:0005515
Arst9g00789 539 Gene3D Tetratricopeptide repeat domain 240 347 IPR011990 GO:0005515
Arst9g00789 539 Pfam Pentatricopeptide repeat domain 233 291 IPR002885 -
Arst9g00789 539 FunFam Pentatricopeptide repeat-containing protein mitochondrial 106 318 - -
Arst9g00789 539 Pfam PPR repeat 178 206 IPR002885 -
Arst9g00789 539 Pfam PPR repeat 355 379 IPR002885 -
Arst9g00789 539 Pfam PPR repeat 391 417 IPR002885 -
Arst9g00789 539 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 175 209 IPR002885 -
Arst9g00789 539 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 275 IPR002885 -
Arst9g00789 539 PANTHER OS12G0527900 PROTEIN 50 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g00789 Arst-Chr9 7553458 7556498 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g00789 1 528 EF-hand Containing Proteins AT1G02150 50.657 0.0 540
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g00789 - - gmx:100780408 644.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst9g00789 9 7553458 7556498 Arst9g00789 9 7553458 7556498 ECH