Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00544 ATGTTGTTGTGCGTGCGTCACTTGAATATGAACATGGTGTCGCATGATCCATGTTCCACCAAATCCTCCAAGGAAATGCAAACCTCTGTTTCACCCTCTTCTTCTCTTCATTACCCTCACTCCTTCTTTCTTCCAATTCCAAACATCTCCAACTTCAAACCTCTCTCAATATCCTCACAACAAACAGAACCATTTCCCTCAGAGTTACCACCCCACAACACCAAACCCACCCCAGGCTCCATTCTCAACCACCCCAAAGACCGCACTTTCACACATTTGCATTTCAACCCCAAAAACATTGACCTTGCACCCCACGTGTTCGACCAAAGTCCCCACAGAGAAAGTTCAACTATTAGACTTGAACAAGCAATGAGATCCATGATTTGGGTGAAGAGGTTCAACCTTGGTGTTGCCACCGTTGCTTCTGCTCTTCCCATTTGTTCAAAGTTGAGAGCTTTAAAACAAGGGAAGGAGCTTCATGCTTATGCTTTGAAACGTGGGATTATACCCCACGTGTCCATAGTTTCTTCCTTGATGGTGTTGTATTCTAAGTGTGGTGTGATTGAGTATTCTATGAGACTATTTGATGGATTGGAGAAGAAAAATGTGATTTTGTGGACGGCCATGATTGATTCATGTGTGGAAAATGGGTGTTTTTATGAAGCTCTTGGTGTCATAAGGTCAATGCAATTGACAAAGCATAAGGCGGATACAGTTACCTTTGCAAGGATGTTGTGTGTTTGTGGTGAACTAAGAGTTTTAAAGCTTGGGAAGGAGGTTCATGGGCAGGTACTAAAAAGGGGTTTTGAATCAATACATTATGTTGCTGCTGAGGTTATCAATATGTATGGTGTTTGTGGAGATTTTGATAAGGCAAAGTTGGTGTTTGATGCTGTTCCTGTTAAAGGTTCAATGACATGGACTGCTCTTATAAGGGCTTATGGTTATAAAGAATGGTATCAAGATGCAATTGACCTTTTTGATCACATGATATTAAATGGTTGTTCTCCAAATATCTTCACTTTTGAAGCTGTTCTATCTATTTGTGATAGAGGTGGATTTGTTGAAGATGCTTTTAGGATCTTTGATTTAATGTCAAGATATAAAATTGAAGCATCCAAGGAACACTGCACTATAATGATTCGACTTCTTACTCGTTATGGTAAACTAGATGAGGCGCTAAGATTTGTTGAAATGAGTTATTCCTTGTAG 1212 0.4018 MLLCVRHLNMNMVSHDPCSTKSSKEMQTSVSPSSSLHYPHSFFLPIPNISNFKPLSISSQQTEPFPSELPPHNTKPTPGSILNHPKDRTFTHLHFNPKNIDLAPHVFDQSPHRESSTIRLEQAMRSMIWVKRFNLGVATVASALPICSKLRALKQGKELHAYALKRGIIPHVSIVSSLMVLYSKCGVIEYSMRLFDGLEKKNVILWTAMIDSCVENGCFYEALGVIRSMQLTKHKADTVTFARMLCVCGELRVLKLGKEVHGQVLKRGFESIHYVAAEVINMYGVCGDFDKAKLVFDAVPVKGSMTWTALIRAYGYKEWYQDAIDLFDHMILNGCSPNIFTFEAVLSICDRGGFVEDAFRIFDLMSRYKIEASKEHCTIMIRLLTRYGKLDEALRFVEMSYSL* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00544 403 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 338 372 IPR002885 -
Rops4g00544 403 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 303 337 IPR002885 -
Rops4g00544 403 Gene3D Tetratricopeptide repeat domain 277 401 IPR011990 GO:0005515
Rops4g00544 403 Pfam PPR repeat 205 230 IPR002885 -
Rops4g00544 403 Pfam PPR repeat 377 397 IPR002885 -
Rops4g00544 403 Pfam PPR repeat 279 298 IPR002885 -
Rops4g00544 403 Pfam PPR repeat family 303 347 IPR002885 -
Rops4g00544 403 Gene3D Tetratricopeptide repeat domain 113 276 IPR011990 GO:0005515
Rops4g00544 403 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 125 218 IPR046960 GO:0003723|GO:0009451
Rops4g00544 403 NCBIfam pentatricopeptide repeat 306 339 IPR002885 -
Rops4g00544 403 NCBIfam pentatricopeptide repeat 205 237 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00544 Rops-Chr4 14983565 14984776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00544 139 397 Glycoside Hydrolase AT3G49170 28.846 4.08e-35 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00544 - - lja:Lj3g3v0594250.1 508.449