Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01929 ATGAGTGTACTTAGACTTGAATCTTCTCTTCACAACCAAACCCTTTCTCTCTCTTCTTCGCTCTCTTACTCTCTCCCCTTCAAGCTCTCTTCCTCCACTCTACCCTTCGCTCGCACGCGCGCCACGTGCCTCCCTCTGATAACGTGTTCCGTCTCCAAGGTCCACAGCTATGGCACCGTGGACTACGAGCGTCGCCCCATTGTGCGGTGGAACGAAGTGTACCGCCGGATAACGCTCAACCCGGACCCCGACGTGGGCTCCGCCGAGGTGCTCAACCGGTGGGAGAACGAAGGCAAACACCTCACCAAGTGGGAACTCTCCAGAGTCGTCAAGGAGTTGAGGAAGTACAAGAAGTTTCGGAGAGCCCTTGAGGTATATGATTGGATAAACAATAGAGCAGAGCGGTTTAGAGTTTCCGAGAGTGATGCAGCAATTCAGTTAGATCTAATTGCAAAAGTTCGTGGGTTTTCTAGTGCAGAAGTATTTTTTCTGAGTCTGGAAGATCAGTTAAAAAATAAGAGAACTTATGGCGCCCTTTTGAATGTCTATGTGCATTCCAGAATGAAGGAAAAGGCAGAATCTTTATTTGACACAATGAGGACTAAAGGATATGTAGTACATTCACTACCATTTAATGTAATGATGACTCTGTACATGAACTTAAAGGAATATGTTAAAGTTGATATGCTGGTTTCTGAAATGATGGAAAAAAAGATACAGCTAGATATCTATACATATAATATCTGGTTATCTTCTTGTGGATCCCAAGGATCAATAGAGAAGATGGAACAAGTGTTTGAACAGATGGAAAAGGATGCTACCATTATCCCTAACTGGTCTACATTCAGCACAATGGCTTCAATGTACATTAGGATGGATCAGACTGAAAAAGCAGAAGAGTGCTTAAGAAAGGTTGAGAGTAGAATTAAAGGTCGTGATAGAATACCTTTTCATTATCTCCTGAGTTTATATGGACGTGTTCGAAACAAAGACGAAGTTTATCGAGTTTGGAATTCGTACAAATCAGTTTTTCCAAAAAATACACCAAACTTGGGATACCATGCTATTATTGCTTCTCTGGTTAAATTGGATGATATTGCGGGTGCAGAAAAACTTTATCAGGAATGGGTTTCTGTAAAGTCAAGTTATGATCCTAGAGTAGGAAACCTTCTCCTAGGCTGGTATGTTGAGGCAGGTGATATTCATAAGGCTTTGAGTTTCTTCAAGCAGATGAAGGAGGATGGCGGTTTTCCGAATTCAAATACATGGGAGATTCTCTCGGAGGGCTACATTGCAGCTAAGAGGATTTCTGAGGCCTTATCCTGCTTGAAAGAGGCTTTTATGGTTGCTGACAATTCAAGGAGCTGGAGACCAAAGCCCTTGAACTTGTCTGCATTCCTTGAGCTTTGCCAAGAACAAGGTGACATGGAAAGTGCTGAGACTTTTATTGTACTATTGAAGCTGTCCAAATTTAGTAAATATAAAGCTTATGCATCACTTATTGGCTCATCTGGTGATGGATTATCAAGCAAGATTGATACAATAGTTAGAACTGATGATATTCATGACAGTGAAGACATGGATGGTGACTCTGAAATGTTGTTGAATGAACTAGAGAGTAACTTTTGA 1629 0.418 MSVLRLESSLHNQTLSLSSSLSYSLPFKLSSSTLPFARTRATCLPLITCSVSKVHSYGTVDYERRPIVRWNEVYRRITLNPDPDVGSAEVLNRWENEGKHLTKWELSRVVKELRKYKKFRRALEVYDWINNRAERFRVSESDAAIQLDLIAKVRGFSSAEVFFLSLEDQLKNKRTYGALLNVYVHSRMKEKAESLFDTMRTKGYVVHSLPFNVMMTLYMNLKEYVKVDMLVSEMMEKKIQLDIYTYNIWLSSCGSQGSIEKMEQVFEQMEKDATIIPNWSTFSTMASMYIRMDQTEKAEECLRKVESRIKGRDRIPFHYLLSLYGRVRNKDEVYRVWNSYKSVFPKNTPNLGYHAIIASLVKLDDIAGAEKLYQEWVSVKSSYDPRVGNLLLGWYVEAGDIHKALSFFKQMKEDGGFPNSNTWEILSEGYIAAKRISEALSCLKEAFMVADNSRSWRPKPLNLSAFLELCQEQGDMESAETFIVLLKLSKFSKYKAYASLIGSSGDGLSSKIDTIVRTDDIHDSEDMDGDSEMLLNELESNF 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01929 542 Gene3D Tetratricopeptide repeat domain 249 347 IPR011990 GO:0005515
Phco1g01929 542 Pfam Pentatricopeptide repeat domain 230 289 IPR002885 -
Phco1g01929 542 Gene3D Tetratricopeptide repeat domain 348 509 IPR011990 GO:0005515
Phco1g01929 542 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 242 276 IPR002885 -
Phco1g01929 542 Gene3D Tetratricopeptide repeat domain 84 235 IPR011990 GO:0005515
Phco1g01929 542 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 172 206 IPR002885 -
Phco1g01929 542 NCBIfam pentatricopeptide repeat 389 419 IPR002885 -
Phco1g01929 542 NCBIfam pentatricopeptide repeat 244 272 IPR002885 -
Phco1g01929 542 NCBIfam pentatricopeptide repeat 175 205 IPR002885 -
Phco1g01929 542 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 384 418 IPR002885 -
Phco1g01929 542 SUPERFAMILY TPR-like 279 452 IPR011990 GO:0005515
Phco1g01929 542 FunFam Pentatricopeptide repeat-containing protein 229 350 - -
Phco1g01929 542 Pfam PPR repeat 175 203 IPR002885 -
Phco1g01929 542 Pfam PPR repeat 389 415 IPR002885 -
Phco1g01929 542 PANTHER OS12G0527900 PROTEIN 62 501 - -
Phco1g01929 542 FunFam Pentatricopeptide repeat-containing protein 84 228 - -
Phco1g01929 542 SUPERFAMILY TPR-like 65 413 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01929 Phco-Chr1 58932017 58935623 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g01929 1 58932017 58935623 Phco1g01929 1 58932017 58935623 ECH