Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste7g00237 CTCCTTATACCATCCCACCATTTCTGAAGTAGTTGCTGCTGCTGCTGTCACAGGCTCACTCATTAACCCACACAGAGCAATATGAGTCTCCTTCGAATTCAATCCTCTTTGCACAACCAAACCCTCTCTTTCTCATCTTCTCTCTCTTTTTCTCCCTTCAAACTCTCTTCCTCTTTCTCTAACTCTTCTACTCTCACCGTTGGTCACACGCACGCCCCGTGCTACCCTCGCTTCTCGGTGACGTGTTCCATCTCCAAAATCCACAGCTACGGCACAGTGGACTACGAGCGCCGACCCATCGTGCGCTGGAACGACGTGTACCGCAGGATATCACTCAACCCCCAAGTGGGGTCCGCCGAACTTCTTAACCAGTGGGAGAACGAAGGGAGACACCTCACCAAATGGGAACTCTCTAGAGTCGTCAAGGAGTTGAGGAAGTACAGGCGATTTCAGAGAGCCCTTGAGGTATATGATTGGATGAACAATAGACCGGAGCGGTTTAGAGTTTCTGCGAGTGATGCAGCAATTCAGTTAGATCTAATTGCAAAAGTTCGTGGAGTGTCTAGTGCAGAAGTATTCTTTCTGAGTCTGGAAGATAAATTAAAAGATAAGAGGACTTATGGTGCCCTTTTGAACGTATATGTGCATTCTAGATCGAAGGAAAAGGCAGAATCTCTACTTGATACGATGAGGAGTAAAGGGTATGTAATACATGCACTACCATTTAATGTAATGATGACTCTGTACATGAACCTAAAGGAATACCATAAAGCTGATACATTGGTTTCTGAGATGACGGAAAAAAACATACCGCTAGATATCTATACGTATAATATCTGGTTATCTTCTTGTGGATCTCAAGGATCAGTAGAAAAGATGGAAAATGTGTTTGAACAGATGGAAAAGGATCCTACCATTATCCCTAACTGGTCTACATTCAGCACAATGGCTTCAATGTATATTAGGTTGGATCAGCTTGAAAAGGCAGAGGAGTGCTTAAGAAAGGTTGAGAGTAGAATTAAAGGTCGTGATAGAATACCTTTCCATTATCTCCTAAGTTTATATGGAAGTATTGGAAAGAAAGATGAAGTATATCGAATATGGAATACGTACAAATCAATTTTTCCAAGTATACCAAATCTGGGATTTCATGCTATTATTTCTTCTCTGGTTAAATTGGATGATATTGAGGGCGCTGAAAAACTTTATGAGGAATGGGTTTCAGTGAAGTCAAGTTATGACCCTAGAGTAGGAAACCTTCTCCTAGGCTGGTATGTTAAGAAAGACACTACAGATAAAGCTTTGAGTTTCTTTGAACAGATGTCTAAGGATGGTGGCTTTCCAAATTCAAATACATGGGAGATTCTTTCTGAGGGACACATTGCAGATAAGAGGATTTCTGAAGCCCTGTCCTGTTTGAAAGAAGCTTTTATGGCTGCTGATGGTTCAAAGAGCTGGAGACCAAAGCTCGTCAACTTGTCTGCATTCCTTGAGCTTTGTCAAGATCAAGAAGACATGGAAAATGCTGAGGTTTTAATTGGACTGCTGAGGCAGTCACCATTTAGTAAAAGTTCAGTTTATGCATCGCTCATTGGTTCATCTGACGAATCCATTGACAAATTGCCAAGCAAGACTGATACAGCTGATAGATTTGATGATGTCGTTGACAGTGAAAACATGGATAGTGACTCTCCAATGTTGTTGAACAAACTAGATAGTACTTTTTAATACTTTTATTTCTTTTTCTCTTGAGTAGTGGAAAATGGTTTGCTAGAACATACAAGGGATTTTTTGTCAAATATGATAACTTCAGAGTTTAATGACTTCTATGTCTCATCATAATAGTTAGAAAGCGAGAGCTGATTTTGGAACCTTGGAGCTACAATTGTATCTGATGTAGCCTTTGATACGAATTCATGTTGATATGTGATCTTGGGTATTGATTATGACCCAAACCAGTTATTAAGTTACTAAAAATGAAGTCTGAAGTTCTTTTTTGGTAAG 2004 0.4027 MSLLRIQSSLHNQTLSFSSSLSFSPFKLSSSFSNSSTLTVGHTHAPCYPRFSVTCSISKIHSYGTVDYERRPIVRWNDVYRRISLNPQVGSAELLNQWENEGRHLTKWELSRVVKELRKYRRFQRALEVYDWMNNRPERFRVSASDAAIQLDLIAKVRGVSSAEVFFLSLEDKLKDKRTYGALLNVYVHSRSKEKAESLLDTMRSKGYVIHALPFNVMMTLYMNLKEYHKADTLVSEMTEKNIPLDIYTYNIWLSSCGSQGSVEKMENVFEQMEKDPTIIPNWSTFSTMASMYIRLDQLEKAEECLRKVESRIKGRDRIPFHYLLSLYGSIGKKDEVYRIWNTYKSIFPSIPNLGFHAIISSLVKLDDIEGAEKLYEEWVSVKSSYDPRVGNLLLGWYVKKDTTDKALSFFEQMSKDGGFPNSNTWEILSEGHIADKRISEALSCLKEAFMAADGSKSWRPKLVNLSAFLELCQDQEDMENAEVLIGLLRQSPFSKSSVYASLIGSSDESIDKLPSKTDTADRFDDVVDSENMDSDSPMLLNKLDSTF 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste7g00237 548 NCBIfam pentatricopeptide repeat 248 276 IPR002885 -
Pste7g00237 548 NCBIfam pentatricopeptide repeat 179 209 IPR002885 -
Pste7g00237 548 NCBIfam pentatricopeptide repeat 215 246 IPR002885 -
Pste7g00237 548 SUPERFAMILY TPR-like 68 398 IPR011990 GO:0005515
Pste7g00237 548 Pfam PPR repeat 179 207 IPR002885 -
Pste7g00237 548 Pfam PPR repeat 357 380 IPR002885 -
Pste7g00237 548 Pfam PPR repeat 392 418 IPR002885 -
Pste7g00237 548 Pfam PPR repeat 284 311 IPR002885 -
Pste7g00237 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 246 276 IPR002885 -
Pste7g00237 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 387 421 IPR002885 -
Pste7g00237 548 PANTHER OS12G0527900 PROTEIN 24 504 - -
Pste7g00237 548 FunFam Pentatricopeptide repeat-containing protein 233 353 - -
Pste7g00237 548 Pfam PPR repeat family 215 257 IPR002885 -
Pste7g00237 548 Gene3D Tetratricopeptide repeat domain 87 227 IPR011990 GO:0005515
Pste7g00237 548 Gene3D Tetratricopeptide repeat domain 350 488 IPR011990 GO:0005515
Pste7g00237 548 Gene3D Tetratricopeptide repeat domain 228 349 IPR011990 GO:0005515
Pste7g00237 548 MobiDBLite consensus disorder prediction 511 536 - -
Pste7g00237 548 MobiDBLite consensus disorder prediction 512 530 - -
Pste7g00237 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 176 210 IPR002885 -
Pste7g00237 548 FunFam Pentatricopeptide repeat-containing protein 88 232 - -
Pste7g00237 548 FunFam Pentatricopeptide repeat-containing protein 354 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste7g00237 Pste-Chr7 2220849 2223865 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste7g00237 6 504 EF-hand Containing Proteins AT1G02150 59.281 0.0 628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste7g00237 7 2220849 2223865 Pste7g00237 7 2220849 2223865 ECH