Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0465 ATGAGTCTCCTTCAAATTCAATCCACTCTGCACAACCAAAACGTTTTTCTCCCTCTCTCATCTTCGACCTCCTATTCTCTCCCACTTCCCGTGAAGCACACTTCCACTCTCACCCTCGGTAACACGCAAAGGTCATGTTTCCAGAGGCTCTGGGTGACGTGTTCCATCTCCAAGATTCACAGCTATGGCACTGTGGACTACGAGCGAAGACCCATAGTTCGGTGGAACGATGTGTACAGAAAGATATCGTTGATGGCAAAACCTGAAGAGGGTTCTGCCACTGTCTTGAATCAGTGGGAAAATGAAGGCAAACACCTCACTAAGTGGGAACTTTCAAGAGTTGTCAAAGAGTTGAGGAAGTATGGCAGATATGGAAAGGCCCTTCAGGTATATGATTGGATGAACAATAGACCAGAGAGGTTTAGAGTTTCTGAGAGTGATGCAGCAATTCAGTTAGATCTAATTGCCAAAGTTCGTGGCGTTTCTAGTGCTGAAGCGTTTTTTCTGAGTCTGATTGATAAGTTAAAAGATAGGAGGACTTATGGTGCCCTTTTGAATGTATACGTGCATTTTAGATTGAAAGAAAAGGCAGAATCTTTACTTGACACAATGAAGAGTAAAGGATATGTAACACATTCTCTACCATTTAACGTAATGATGACTCTGTACATGAACCTTAAAGAATATGATAAAGTTGATATGCTGGTTTCTGAAATGACGGAAAAAAGCATACAGCTAGACATCTATACATATAACATCTGGTTATCTTCTTGTGGATCTCAAGGATCAATAGAGAAGATGGAACAAGTGTTTGAACAGATGGCAAAGGATCCTGCCATTGTCCCGAACTGGACTACATTCAGCACAATGGCTTCGATGTATATTAGGATGGATCAGAATGAAAAAGCAGAAGAGTGCTTACGAAAGGTTGAGGGTAGAATTAAAGGTCGAGATAGAATACCTTTTCATTATCTCCTGAGTTTATATGGAAGTGTTGGAAAAAAAGATGAAGTTTATCGTGTGTGGAATACCTATAAATCAATTTTCCCAAGTATACCAAACTTGGGATACCATGCCATTATTTCGTCTCTGGTTAAATTGGATGATATTGAGGGTGCAGCGAAGCTATATGAGGAATGGGCTTCAGTAAGGACTACTCATGATCCTAGAATAGGAAATCTTCTCCTAGGCTGGTATGTTAAAAAAGGCAGTACAGAAAAAGCTTTGATTTTCTTTGAGCAGCTGAAGCAAGGTGGTGGAAAACCAAATGCAAATACATGGGAGATTCTTTCTGAGGGCCATATTGCAGATAAGAGAATTTCTGAGGCCCTGTCCTGCTTGAAAGAAGCTTTTATGGCTGCTGATGGTTCAAAGAGTTGGAGACCAAAGCCCTTAAACTTGTCTGCATTCCTTAAGCTTTGCCAGGACCAAGATGAAATGGCAAGTGCTGAGGTCTTAATTGGACTGTTGAGGGAGTCAAAATTTAGTAAAGATAAAGTTTATGCATCACTCATTGACTCATTTGATGGTACCATTGGCAATGGTGAATTGTCAAGCAAGGTTGATACAGCAGATAGAAGTGAAGATATCATTGTCAGTGAAAATGTGGATGATGACTCTCAAATGTTGTTCAGCTTTTGA 1641 0.4046 MSLLQIQSTLHNQNVFLPLSSSTSYSLPLPVKHTSTLTLGNTQRSCFQRLWVTCSISKIHSYGTVDYERRPIVRWNDVYRKISLMAKPEEGSATVLNQWENEGKHLTKWELSRVVKELRKYGRYGKALQVYDWMNNRPERFRVSESDAAIQLDLIAKVRGVSSAEAFFLSLIDKLKDRRTYGALLNVYVHFRLKEKAESLLDTMKSKGYVTHSLPFNVMMTLYMNLKEYDKVDMLVSEMTEKSIQLDIYTYNIWLSSCGSQGSIEKMEQVFEQMAKDPAIVPNWTTFSTMASMYIRMDQNEKAEECLRKVEGRIKGRDRIPFHYLLSLYGSVGKKDEVYRVWNTYKSIFPSIPNLGYHAIISSLVKLDDIEGAAKLYEEWASVRTTHDPRIGNLLLGWYVKKGSTEKALIFFEQLKQGGGKPNANTWEILSEGHIADKRISEALSCLKEAFMAADGSKSWRPKPLNLSAFLKLCQDQDEMASAEVLIGLLRESKFSKDKVYASLIDSFDGTIGNGELSSKVDTADRSEDIIVSENVDDDSQMLFSF* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0465 546 Pfam PPR repeat 393 419 IPR002885 -
Apr10g0465 546 Pfam PPR repeat 180 208 IPR002885 -
Apr10g0465 546 Gene3D Tetratricopeptide repeat domain 107 313 IPR011990 GO:0005515
Apr10g0465 546 Gene3D Tetratricopeptide repeat domain 322 534 IPR011990 GO:0005515
Apr10g0465 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 388 422 IPR002885 -
Apr10g0465 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 277 IPR002885 -
Apr10g0465 546 PANTHER OS12G0527900 PROTEIN 47 507 - -
Apr10g0465 546 PANTHER OSJNBB0038F03.9 PROTEIN 47 507 - -
Apr10g0465 546 TIGRFAM PPR: pentatricopeptide repeat domain 249 282 IPR002885 -
Apr10g0465 546 SUPERFAMILY TPR-like 284 450 IPR011990 GO:0005515
Apr10g0465 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 177 211 IPR002885 -
Apr10g0465 546 Pfam Pentatricopeptide repeat domain 235 294 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0465 Apr-Chr10 11415052 11419163 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0465 6 519 EF-hand Containing Proteins AT1G02150 59.612 0.0 642
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0465 - - gmx:100780408 856.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g0465 10 11415052 11419163 Apr10g0465 10 11415052 11419163 ECH