Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g01528 ATGCTCCTTCAGTCGTCTTTGCATAACCAAAACGTCTCTCTCTCCTCACCTCTACACTATTCTCGACCTCTTCCCTGCAAAATTTCCACCTTTACCCTTCCTCAAACATTAGATTTCCAGAGACTCTCAGTCACCTGCTCAATCCCGAAGACTCACAGTTATGGAACCATGGACTACGAGCGAAGACCCATTGTTAGATGGAATGATATATACAGGAGAATATCTTTGATGGAAAATCCCGAGTTGGGTTCAGCGAGTGTGCTGAATCAGTGGGAGAATGAGGGGAAGAACCTCACCAAATGGATGCTTTGGAGAGTGGTTAAAGAGTTGAGGAAACACAAGAGGCATGAGAGAGCTCTCGAGGTATATGAATGGATGAGCAACAGGGAAGAGAGGTTTAGATTGACTAAAAGTGATGCTGCAATTCAATTAGATCTAGTTGCCAAAGTTCATGGAGTTTCTAGTGCAGAAGAATATTTCCTAAGGCTCACTGATGAATTTAAAGATAAGAGAACATATGGGGCTCTTTTGAATGCATATGTGAGCACTGGACTTAAAGACAAGGCagaatctatacttgacacaATGAGGAACAAGGAGTATGCGACTCATGCACTTCCATTTAATGTAATGATGAGTCTGTACATGAAACTAAAGGAATATGACAAAGTTGACCTCATGGTTtctgaaatgaaagaaaagaacatacAACtagatatatattcatataatatctGGTTAGCTTCTTGCGGTTCCCAAGGATCAACGGAAAAGATGGAACAAGCATTTGAAGAAATGACAAAGTATAAGACAATTATTCCCAACTGGTCTACATTCAGCACAATGGCTACAATGTACATTAAGATGCATCAGTTAGACAAGGCAGAAGAGTGCATAAGAATGGTTGAGGGTAGCATCAGAGGTAGTAGAGATAGGATTCCTTTTCATTATCTCCTCACTTTATATGGAAATGTTGGTAAAAAAGAGGAGGTTTATCGTGTGTGGAAAGcctatcaattaattttcccCACTATTCCAAACTTGGGATACCTTGCTATTATTTCCTCACTGGTTAGAATTGGTGATATTGAAGGTGCAGAAAAACTTTACGAGGAATGGCTTTCTGTAAAATCGACTTATGATCCTAGAATAGGAAATCTTCTCATAGGTTGGTATGTCAAGAACCGAAATGCAGATAAAGCTTTGGGTATATTTGAGCGTATGATTGAAGTTGGTGGAACACCAAATTCAAGTACATGGGAGCTTCTTGCCAATGGCCATATTGGTGAGAATAGGGTTTCTGAAGCCTTGACTTGCTTTGAAGAAGCTTTTAAGGCTAATTGTCCAAAGGGTTGGAGGCCGGAGCCGGTAAGCGTGTCTGCTTTCTTTAAGTACTGTCAAGACAAAGATGACTTGGCAAGCATTAAAGCTTTGACTGGGCTGTTGAGGCAGTCAAATTTGCTTAATGATGAAGTTTATGAATCACACATTGGCTTGTCTGATGATGCTGTTGGTAGCGGTGACTTGTTGAGCAAGATTGATGCCACTGATAGAGCAGATGATAACTATGACAATGAGGACACTAAAGATGGTTCTCAAATACTTGTCAACCAACTGGAGGGTAGCCTGTA 1631 0.3899 MLLQSSLHNQNVSLSSPLHYSRPLPCKISTFTLPQTLDFQRLSVTCSIPKTHSYGTMDYERRPIVRWNDIYRRISLMENPELGSASVLNQWENEGKNLTKWMLWRVVKELRKHKRHERALEVYEWMSNREERFRLTKSDAAIQLDLVAKVHGVSSAEEYFLRLTDEFKDKRTYGALLNAYVSTGLKDKAESILDTMRNKEYATHALPFNVMMSLYMKLKEYDKVDLMVSEMKEKNIQLDIYSYNIWLASCGSQGSTEKMEQAFEEMTKYKTIIPNWSTFSTMATMYIKMHQLDKAEECIRMVEGSIRGSRDRIPFHYLLTLYGNVGKKEEVYRVWKAYQLIFPTIPNLGYLAIISSLVRIGDIEGAEKLYEEWLSVKSTYDPRIGNLLIGWYVKNRNADKALGIFERMIEVGGTPNSSTWELLANGHIGENRVSEALTCFEEAFKANCPKGWRPEPVSVSAFFKYCQDKDDLASIKALTGLLRQSNLLNDEVYESHIGLSDDAVGSGDLLSKIDATDRADDNYDNEDTKDGSQILVNQLEGSL 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g01528 543 Gene3D Tetratricopeptide repeat domain 226 342 IPR011990 GO:0005515
Bva02g01528 543 PANTHER OSJNBB0038F03.9 PROTEIN 36 500 - -
Bva02g01528 543 Gene3D Tetratricopeptide repeat domain 343 480 IPR011990 GO:0005515
Bva02g01528 543 Gene3D Tetratricopeptide repeat domain 78 223 IPR011990 GO:0005515
Bva02g01528 543 SUPERFAMILY TPR-like 257 447 IPR011990 GO:0005515
Bva02g01528 543 PANTHER OS12G0527900 PROTEIN 36 500 - -
Bva02g01528 543 Pfam PPR repeat 386 412 IPR002885 -
Bva02g01528 543 Pfam PPR repeat 350 374 IPR002885 -
Bva02g01528 543 Pfam PPR repeat 172 199 IPR002885 -
Bva02g01528 543 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 203 IPR002885 -
Bva02g01528 543 TIGRFAM PPR: pentatricopeptide repeat domain 208 239 IPR002885 -
Bva02g01528 543 TIGRFAM PPR: pentatricopeptide repeat domain 386 416 IPR002885 -
Bva02g01528 543 TIGRFAM PPR: pentatricopeptide repeat domain 241 270 IPR002885 -
Bva02g01528 543 Pfam Pentatricopeptide repeat domain 228 286 IPR002885 -
Bva02g01528 543 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 381 415 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g01528 Bva-Chr2 18275910 18278947 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g01528 1 515 EF-hand Containing Proteins AT1G02150 58.252 0.0 625
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g01528 - - qsu:112001705 716.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g01528 02 18275910 18278947 Bva02g01528 02 18275910 18278947 ECH