Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4589 ATGACGACGCTTCTTCAATCCTCTCTGAACAACAAAAGCCTCTCTCTATCTCTCTCATCTTCTCCCTGCTATTCTTCCCCACTTCCCTTCAAGCTCTCCACTCTCAACTTGTCTCAGACACAGAGCGTGTGTTACCAGAGTCTCTCTGTCACCTGCTCCATCTCAAAGATCCACAATTATGGCACCGTGGACTATGAGCGCAGACCCATTGTCAGGTGGAACGATATTTACAGGAGGATATCGTTGATGGAAAACCCTGAACTGGGTTCTGTTTCTGTGTTGAATCAGTGGGAGAATGAAGGCAAGAATCTTACTAAGTGGGAGCTTTCCAGGGTTGTCAAGGAGTTGAGGAAGTATAGGAGACATCAGAGAGCCCTTGAGGTGTATGATTGGATGAACAATAGACAAGAGAGGTTCAGAGTATCTGCAAGTGACGCAGCAATTCAGTTAGATCTAGTTGCAAAAGTTCATGGAGTTTCTAGTGCAGAAAGATTTTTTCTGAACCTGACTGATAACTTAAAAGACAAGAGGACTCATGGTTCCCTGTTGAATGTATATGTGCACTACAGATTGAAGGAAAAGGCGGAATCTTTACTTGACATTATGAGGAGTAAAGGGTATGTGATACATTCACTACCATTTAATGTAATGATGACTCTGTACATGAACCTCAAGGAATATGATAAAGTTGATATGTTGATTTCAGAAATGAAAGAGAAAAACATACGGCTCGATATCTATTCATATAATATCTGGTTATCTTCTTGTGAGTCGATAGAAAAGATGGAACAAGTGTTTGAACAAATGGGAAAGGATCCTGCCATTGTCCCCAACTGGAGTACATTCAGCACAATGGCTACTATATACATTAAGATGAATCAGTTTGAAAAAGCAGAAGACTGCTTAAGAAAGCTTGAGAGTAGAATTAAAGGTCGAGATAGAATACCTTTTCATTACCTCCTGAGTCTGTATGGAGGTGTTGGAAACAAGGATGAAGTTTATCGCGTGTGGAGTACCTATAAATCAATTTTCCCAACTATACCAAACTTGGGATACCATGCTATTGTTTCTTCTCTGATCAGAATAGATGATATTGAGGGTGCAGAAAAGCTTTATGAGGAATGGGTTTCAGTAAGATCTTCTGATGATGCTAGATTGGGAAACCTTCTCATAGGCTGGTATGTGAAGAATGACAATATAGATAAAGCGTTGAATTTCTTTGAGCACATGACTGATGGTGGTAGTGTTCCAAATTCGAATACATGGGAGCTTCTCTCTGAGGGCTATATTGCAGATAAGAGGGTTTCTGAGGCCCTATCCTGCTTGAAAAAAGCTTTTGCCACTGATGGTTCAAAGAGTTGGAAACCAAAGCCCTTAACCTTGTCTGCATTCTTTAAGCTTTGTCAAGACGAAGATGACACGGCGAGCACCGAGATTTTAATTGGGTTGTTGAGGAAGTCGGGATTTCTTGAAAATGAAGCTTATGCATCACTCATTGGCTTATCTGATGCTACCATTGGCAAAGGTGACTTGTCTAGAACTGATGATATTGTTGACAGTGAAAATGTGGATGATGACTCTCAAATGTTGTTAAACCAACTATAG 1605 0.405 MTTLLQSSLNNKSLSLSLSSSPCYSSPLPFKLSTLNLSQTQSVCYQSLSVTCSISKIHNYGTVDYERRPIVRWNDIYRRISLMENPELGSVSVLNQWENEGKNLTKWELSRVVKELRKYRRHQRALEVYDWMNNRQERFRVSASDAAIQLDLVAKVHGVSSAERFFLNLTDNLKDKRTHGSLLNVYVHYRLKEKAESLLDIMRSKGYVIHSLPFNVMMTLYMNLKEYDKVDMLISEMKEKNIRLDIYSYNIWLSSCESIEKMEQVFEQMGKDPAIVPNWSTFSTMATIYIKMNQFEKAEDCLRKLESRIKGRDRIPFHYLLSLYGGVGNKDEVYRVWSTYKSIFPTIPNLGYHAIVSSLIRIDDIEGAEKLYEEWVSVRSSDDARLGNLLIGWYVKNDNIDKALNFFEHMTDGGSVPNSNTWELLSEGYIADKRVSEALSCLKKAFATDGSKSWKPKPLTLSAFFKLCQDEDDTASTEILIGLLRKSGFLENEAYASLIGLSDATIGKGDLSRTDDIVDSENVDDDSQMLLNQL* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4589 534 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 383 417 IPR002885 -
Lja3g4589 534 SUPERFAMILY TPR-like 68 407 IPR011990 GO:0005515
Lja3g4589 534 SUPERFAMILY TPR-like 279 449 IPR011990 GO:0005515
Lja3g4589 534 Gene3D Tetratricopeptide repeat domain 349 479 IPR011990 GO:0005515
Lja3g4589 534 PANTHER OSJNBB0038F03.9 PROTEIN 37 502 - -
Lja3g4589 534 Pfam Pentatricopeptide repeat domain 233 288 IPR002885 -
Lja3g4589 534 Pfam PPR repeat 178 206 IPR002885 -
Lja3g4589 534 Pfam PPR repeat 388 414 IPR002885 -
Lja3g4589 534 Gene3D Tetratricopeptide repeat domain 233 348 IPR011990 GO:0005515
Lja3g4589 534 PANTHER OS12G0527900 PROTEIN 37 502 - -
Lja3g4589 534 Gene3D Tetratricopeptide repeat domain 89 222 IPR011990 GO:0005515
Lja3g4589 534 TIGRFAM PPR: pentatricopeptide repeat domain 214 245 IPR002885 -
Lja3g4589 534 TIGRFAM PPR: pentatricopeptide repeat domain 388 418 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4589 Lja-Chr3 87730407 87734355 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4589 4 534 EF-hand Containing Proteins AT1G02150 58.052 0.0 649
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4589 - - gmx:100780408 761.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4589 3 87730407 87734355 Lja3g4589 3 87730407 87734355 ECH