Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy9g0563 ATGGAAACCACAGTTCCAATTCCAACCTCAGCTGCAACTCCAACTTCATCTCTCTCTCTTTCTCTTTTCCCTTCAAACACCAACCGCACCTCTCTCCAACTCCCCTTCAACTTCAAACCTCCTCCTTCCATCACCACACAGCAACAACAACCACCACCCATTAACCCTAAACTCAAATTTGCATTTCAACCACAAAACGACGTCGTTTCGGGCAAGTCGCGAACGACGCTCTTGGGAGGAGCAGAATTGGATGTGTCTAGCTTTGTGAATGTTATTGAAAGCTTGGGTGATGCAAATGCGGTTCAAGAAGGGTTTAAGGTTCATGCCATTTTGGTTAAGAACGGTTATTTTCATGCTAGTTTATATATTAAGGTCTGTTTGGTTAGAATGTATTTTAGGTGCGGGAAAATTGAGCTTGCGCGGAGGGTGTTTGATGAAAGTTCTGAGAGAGATGTTGCTTTGTGGGGTGCCATGGTTGCTGGTTTTGCACACCATGGGATGCGGATTGAAGCATTGCAGTATGTGAGGTTGATGGTAGATGAAGGAATAATGCCGAATTCGGCTTTGATGATGGGTGTTCTTCACTTAGTTGGGGAGCTTGGCGCATTGCGGATAGGTCAAGAGGCTCATGCTTACTTAGTGAAGAAGAAATTTTACTATGAGCAAGTGCGAATTCGAACTGCATTGGTTGATATGTATAGTAAATGTGGGGATGTTGGTTCGGGGAGGCGAGTTTTGTCTAGCTTGGTAGAGAGAGGTATAAGTTGTTGGAGTGCTCTGATTGCGGGTTCTGTCTCGAGTGGGGGGTTTCAAAAGGCGGTGAAGTCCATGGTTAGAATGCAGCGAGAAGGGTTCCGGCCTAATCATGTCAGTGTTGCTTCTATCCTTTCGGTTTGTGCACAGTCGAGGGCTCTGAAACGGGGGAAGGAGATTCATGCTTATGCTTTAAAACATTGGTTTCTGCCTCATGTCTCTATAGCTTCTTCGTTGATAGTGTTGTACTCTAAGTGTGGTTTGATTGAATATTGTACAAACCTATTTGATGGTATGGAACGAAGGAATGTGATCTTGTGGACAGCCATGATTGATGCATATGTGGAAAATGGGTGTTTTCCTGAAGCATTTGGTGTCTTAAGGTCAATGCAATTGACAGAGTATAGGCCGGACACAGTTACCATGGCGAGGATGTTAAGTCTTTGCAGCAAACTAAAACTTGTAAAGTTTGGCAAGGAGATTCATGGGCAGTGCTTGATAAAGGTTCAATGA 1266 0.4431 METTVPIPTSAATPTSSLSLSLFPSNTNRTSLQLPFNFKPPPSITTQQQQPPPINPKLKFAFQPQNDVVSGKSRTTLLGGAELDVSSFVNVIESLGDANAVQEGFKVHAILVKNGYFHASLYIKVCLVRMYFRCGKIELARRVFDESSERDVALWGAMVAGFAHHGMRIEALQYVRLMVDEGIMPNSALMMGVLHLVGELGALRIGQEAHAYLVKKKFYYEQVRIRTALVDMYSKCGDVGSGRRVLSSLVERGISCWSALIAGSVSSGGFQKAVKSMVRMQREGFRPNHVSVASILSVCAQSRALKRGKEIHAYALKHWFLPHVSIASSLIVLYSKCGLIEYCTNLFDGMERRNVILWTAMIDAYVENGCFPEAFGVLRSMQLTEYRPDTVTMARMLSLCSKLKLVKFGKEIHGQCLIKVQ* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy9g0563 421 Gene3D Tetratricopeptide repeat domain 259 419 IPR011990 GO:0005515
Ahy9g0563 421 Gene3D Tetratricopeptide repeat domain 75 223 IPR011990 GO:0005515
Ahy9g0563 421 TIGRFAM PPR: pentatricopeptide repeat domain 357 390 IPR002885 -
Ahy9g0563 421 TIGRFAM PPR: pentatricopeptide repeat domain 155 186 IPR002885 -
Ahy9g0563 421 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 253 287 IPR002885 -
Ahy9g0563 421 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 80 419 - -
Ahy9g0563 421 Pfam PPR repeat 256 285 IPR002885 -
Ahy9g0563 421 Pfam PPR repeat 328 355 IPR002885 -
Ahy9g0563 421 Pfam PPR repeat 155 183 IPR002885 -
Ahy9g0563 421 Pfam PPR repeat 357 382 IPR002885 -
Ahy9g0563 421 Pfam PPR repeat 126 150 IPR002885 -
Ahy9g0563 421 Pfam PPR repeat 227 254 IPR002885 -
Ahy9g0563 421 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 354 388 IPR002885 -
Ahy9g0563 421 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 151 185 IPR002885 -
Ahy9g0563 421 PANTHER OS07G0578800 PROTEIN-RELATED 80 419 IPR045215 GO:0003723|GO:0009451
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy9g0563 Ahy-Chr9 7884713 7886602 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy9g0563 88 415 Glycoside Hydrolase AT3G49170 24.850 1.09e-31 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy9g0563 - - ahf:112710215 787.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g0687 19 9476710 9478581 Ahy9g0563 9 7884713 7886602 hybridization
Ahy9g0563 9 7884713 7886602 Ahy14g2705 14 134641134 134643499 PCT
Ahy9g0563 9 7884713 7886602 Ahy4g2378 4 120686793 120689100 PCT