Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0115 ATGATGATTACTATTACGCCTCTTCAAATTCAATCTTCTTTACAAAACCAAAACGTTTCTCTTTCACTTTCTTATTCTCATACTCTTTCCCCCTTCAAACAAAGGGTCAATGTCTTTTACACTGACAGTGGAATTGGAGGTGGAGCAAGAGTTTCTGTCACTTGTTCAATCTCAAAGATTCACAATTATGGTACACTTGATTATGAGAGAAAACCCAATTTGAAATGGAATGCTATATACAAGAGGATTTCAATGATGGAGAATCCTGAATTGGGTTCTGCTTCTGTGTTGAATCAATGGGAGAATGAAGGCAGGAATCTCACCAAATGGGAACTTTGTAGAGTTGTTAAAGAGTTGAGAAAGTACAGAAGACATGACAGAGCTCTTCAGGTATATGATTGGATGAACAATAGACCAGAGAGGTTTAGAATATCTGCAAGTGATGTTGCGATTCAGTTAGATCTAATCGCAAGAGTTCACGGAGTTTCTAGTGCAGAAAGTTTTTTTCTGAACCTAACCAATGATTTAAAAGACAAGAGAACATATGGTGCCCTCTTGAATGCATATGTTCATTCTAGATCAAGAGAAAAGGCAGAATCTTTACTCGAAGTAATGAGGAGTAAAAGGTACTTAACACATTCACTACCGTTTAATTTAATGATGACTCTGTCCATGAACCTTAAGGATTATGATAAAGTCGATATGTTGGTTTCAGAAATGAAAGAAAAGAACATACAGCTAGATATATATACATATAATATCTGGTTGTCCTCTTGTGGATCTCAAGGATCAATAGAGAAGATGGAACAAGTTTTTGAACAGATGTTAAAGGATCCTACCATTATTCCTAATTGGAGTACATTTAGTACAATGGCTGCAATGTATATTAAGATGGAACTGTTTGAAAAAGCACAAGAGTGCTTAAAAAAGGCCGAGGGTAGAATACTAGGTCGAGATAAAGTACCTTTTCATTATCTCCTGAGTTTGTATGGAAGTGTTGGAAACAAGGACGAAGTTTACCGCGTGTGGAATAACTATAAATCAATGTTTCCAAGTATACCTAATTTGGGATACCATGCTGTTATTTCTTCTTTCGTAAGAATGGACGATATTGAGCGGGCAGAAAAGCTTTACGAGGAATGGGTTTCTGTAAGGCCGTCTGATGATTCTAGAATAGGAAACCTTCTCATAAGCTGGTATCTTAAGAAAGGTAAATCAGATAAAGTTTTTAGTTTCTTTAAGCATATGAGTGAAGGTGGTGGATGTCCAAATTCGACTACATGGGAGCTTCTTTCTGAGGGTCATATTGCTGAAAAGAGGGTTTCTGAGGCGCTTTCGTGCTTGGAAAAAGCTTTTATGACAAGTGATTCAAAGAGTTGGAAACCCAAGCCAATAAAATTGGCTGCATTCCTTAAGCTTTGTCAAGACGAAGACGACATGGAGAGCGCCGAGGTTTTAATTGAGTTGTTGAGGAAGTCAGGATACCATAACGATGAAGCATATGCCGCAATCATTAGCAAAGATGAACCGTCAAACAGGACTGATGACCATCTCAATTAA 1560 0.3744 MMITITPLQIQSSLQNQNVSLSLSYSHTLSPFKQRVNVFYTDSGIGGGARVSVTCSISKIHNYGTLDYERKPNLKWNAIYKRISMMENPELGSASVLNQWENEGRNLTKWELCRVVKELRKYRRHDRALQVYDWMNNRPERFRISASDVAIQLDLIARVHGVSSAESFFLNLTNDLKDKRTYGALLNAYVHSRSREKAESLLEVMRSKRYLTHSLPFNLMMTLSMNLKDYDKVDMLVSEMKEKNIQLDIYTYNIWLSSCGSQGSIEKMEQVFEQMLKDPTIIPNWSTFSTMAAMYIKMELFEKAQECLKKAEGRILGRDKVPFHYLLSLYGSVGNKDEVYRVWNNYKSMFPSIPNLGYHAVISSFVRMDDIERAEKLYEEWVSVRPSDDSRIGNLLISWYLKKGKSDKVFSFFKHMSEGGGCPNSTTWELLSEGHIAEKRVSEALSCLEKAFMTSDSKSWKPKPIKLAAFLKLCQDEDDMESAEVLIELLRKSGYHNDEAYAAIISKDEPSNRTDDHLN* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0115 519 SUPERFAMILY TPR-like 231 400 IPR011990 GO:0005515
Mtr8g0115 519 PANTHER OS12G0527900 PROTEIN 50 507 - -
Mtr8g0115 519 Pfam Pentatricopeptide repeat domain 236 295 IPR002885 -
Mtr8g0115 519 PANTHER OSJNBB0038F03.9 PROTEIN 50 507 - -
Mtr8g0115 519 Gene3D Tetratricopeptide repeat domain 357 517 IPR011990 GO:0005515
Mtr8g0115 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 248 278 IPR002885 -
Mtr8g0115 519 Gene3D Tetratricopeptide repeat domain 81 259 IPR011990 GO:0005515
Mtr8g0115 519 Gene3D Tetratricopeptide repeat domain 260 356 IPR011990 GO:0005515
Mtr8g0115 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 178 212 IPR002885 -
Mtr8g0115 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 389 423 IPR002885 -
Mtr8g0115 519 TIGRFAM PPR: pentatricopeptide repeat domain 250 278 IPR002885 -
Mtr8g0115 519 TIGRFAM PPR: pentatricopeptide repeat domain 394 424 IPR002885 -
Mtr8g0115 519 TIGRFAM PPR: pentatricopeptide repeat domain 181 209 IPR002885 -
Mtr8g0115 519 Pfam PPR repeat 394 420 IPR002885 -
Mtr8g0115 519 Pfam PPR repeat 358 382 IPR002885 -
Mtr8g0115 519 Pfam PPR repeat 181 208 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0115 Mtr-Chr8 1341190 1348777 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0115 10 514 EF-hand Containing Proteins AT1G02150 59.172 0.0 627
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0115 - - gmx:100777139 706.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g0115 8 1341190 1348777 Mtr8g0115 8 1341190 1348777 ECH