Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01964 ATGTTAGAGGAAGGAATAAATCCAAATTTGGTTGTAATGACAGTTATTCTTGATGTTATGGGGAAAGTTGGTGCACGAAATTTAGGTAGAGAGGCTCATGGTTTTGTGTTGAAGATGAATTTTTATTACAAGGAATTGTCGATTCAATCGGCATTGATTGATATGTATTGGAAGTGTGGCGATGTTGGCTCGGGGAGCCGGGTTTTGTATAGTGTGATGAAGAGGTATGGTGATGGTTGGATTGGATTGATGTCGGGTAGACTTGAGGTGGAAATGAGGTCTATTATTCGGTTGAAGAGGTTCCGGCCTGGTGCTGTCGCAGTTGCTTCTTTGCTTCCGATTTGTGCACAATTGAGGGCCCTGAAGCAAGGGAAGGAGATCCATGCTTATGCTTTGAGACATTGGCTTCTGCCTAATGTGTCAATAGTGTCTTCTTTGATGGTGTTGTACTCTAAATGTGGTGTGATTGAGTATTCTATGAGACTGTTTGATGGAATGGAAGGAAGGAACGTGGTTTCATGGACCGCCATGATTGATTCGTGCATTGAAAATGGGCATTTGTGTGAAGCGGTTGGTGTCATGAGGTCAATGGTATTGCTGGAGCATAGGCCAGACACGGTTACTGTGGCTAGGATGTTGCATGTGTGTGGCGAGCTGAAAGTTTTGAAGCTTGGGAAGGAGGTTCATGGGCAGGTATTGAAAAGGGGTTTTGCGTCAGTCCATTATGTTGCTGCAGAACTGATTGATATGTATGGAATTTGTGGAGATGTTGATAAGGCGAAGTTGGTGTTTGGTGTGGTTCCTGTTAAAGGTTCAATGACATGGAGTGCTCTTATAAGGGCCTACGGGTATAAAGAATGGTATCAAGAAGCAGTTGACCTTTTTGATGACATGATATCAAATGGTTGCTCTCCGAACCGCTTCACTTTTGAAGCTGTTCTATCTATATGTGATAGAGCTGGATTTGTTGAAGATGCTTTTAGGATCTTTGATTTGATGTCGAGATATAAAATTGAAGCATCCAAGGAACACTGCACTTGCATGATTCGACTTCTTACCCGCTATGGTAAACTAGACGAGGCTCAAAGATTTGTAGAAATGAGTTCTTCCTTATAG 1116 0.4247 MLEEGINPNLVVMTVILDVMGKVGARNLGREAHGFVLKMNFYYKELSIQSALIDMYWKCGDVGSGSRVLYSVMKRYGDGWIGLMSGRLEVEMRSIIRLKRFRPGAVAVASLLPICAQLRALKQGKEIHAYALRHWLLPNVSIVSSLMVLYSKCGVIEYSMRLFDGMEGRNVVSWTAMIDSCIENGHLCEAVGVMRSMVLLEHRPDTVTVARMLHVCGELKVLKLGKEVHGQVLKRGFASVHYVAAELIDMYGICGDVDKAKLVFGVVPVKGSMTWSALIRAYGYKEWYQEAVDLFDDMISNGCSPNRFTFEAVLSICDRAGFVEDAFRIFDLMSRYKIEASKEHCTCMIRLLTRYGKLDEAQRFVEMSSSL 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01964 371 NCBIfam pentatricopeptide repeat 172 206 IPR002885 -
Pumo7g01964 371 NCBIfam pentatricopeptide repeat 274 306 IPR002885 -
Pumo7g01964 371 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 306 340 IPR002885 -
Pumo7g01964 371 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 271 305 IPR002885 -
Pumo7g01964 371 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 204 IPR002885 -
Pumo7g01964 371 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 224 320 - -
Pumo7g01964 371 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 123 223 - -
Pumo7g01964 371 Pfam PPR repeat 144 171 IPR002885 -
Pumo7g01964 371 Pfam PPR repeat 172 198 IPR002885 -
Pumo7g01964 371 Gene3D Tetratricopeptide repeat domain 87 245 IPR011990 GO:0005515
Pumo7g01964 371 Gene3D Tetratricopeptide repeat domain 246 370 IPR011990 GO:0005515
Pumo7g01964 371 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 73 IPR046960 GO:0003723|GO:0009451
Pumo7g01964 371 Pfam PPR repeat family 271 315 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01964 Pumo-Chr7 52980537 52983298 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01964 1 366 Glycoside Hydrolase AT3G49170 24.802 8.64e-41 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01964 - - gmx:100780947 696.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g01964 7 52980537 52983298 Pumo5g00082 5 3589313 3593152 PCT