Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g04667 ATGATCTCTTCCTCAATCACGGTCTTCTCTTCAACACATATAGCTGTTGAATCAACATTGACACAGCACTCTGAGAAATTGAATGTTTCTTTTTCACTTTCATCTTCCCTTTCTTATTCACATTCACTTCCCTTCAAACAAAGGGTCAATGTCTTTTACACTGACAGTGGAATTGGAGCAAGAGTTTCTGTCACTTGTTCAATCTCAAAGATTCACAATTATGGTACTCGTGATTATGAGAGAAAACTCAATGTCAAATGGAATGCCATATACAAGAGGATTTCGATGATGGAGAATCCTGAATTGGGTTCTGCTTCTGTGTTGAATCAATGGGAGAATGAAGGCAGAAATCTCACCAAATGGGAACTTTGTAGAGTTGTTAAAGAGTTGAGGAAGTACAGAAGACATGAAAGAGCTCTTCAGGTATATGATTGGATTAACAATAGACCAGAGAGGTTCCGAATATCTGCAAGTGACGTTGCGATTCAGTTAGATCTAATCGCAAGAGTTCACGGAGTTTCTAGTGCAGAAGGTTTTTTTCTGAACCTAACCAATGATTTAAAAGACAAGAGAACATATGGTGCTCTCTTGAATGCATATGTTCATTCTAGATCAAGAGAAAAGGCAGAATCTTTACTCGAAGTAATGAGGAGTAAAAGGTTCTTAATACATTCACTACCGTTTAATTTAATGATGACTCTGTACATGAACCTTAAGGATTATGATAAAGTCGATATGTTGGTTTCAGAAATGAAAGAAAAGAAGATACAGCTAGATATATATACATATAATATCTGGTTGTCCTCTTGTGGATCTCAAGGATCAATAGAGAAGATGGAACAAGTTTTTGAACAGATGTCAAAGGATCCTACCATTATTCCTAATTGGAGTACATTTAGTACAATGGCTGCAATGTATATTAAGATGGAACTGTTTGAAAAAGCACAAGAGTGCTTAAAAAAGGCCGAGGGTAGATTATTAGGTCGAGATAAAGTACCTTTTCATTATCTCCTGAGTTTGTATGGAAGTGTTGGAAACAAAGACGAAGTTTACCGCGTGTGGAATAACTATAAATCAATGTTTCCAAGTATACCTAACTTGGGATACCATGCTGTTATTTCTTCTCTCGTAAGAATGGACGATATTGAGGGGGCAGAAAAGCTTTACGAGGAATGGGTTTCTGCAAGGCCGTCTGATGATTCTAGAATAGGAAACCTTCTCATAAGCTGGTATCTTAAGAAAGGTAAATCAGAAAAAGTTTTTAGTTTCTTTAAGCATATGACTGAAGGTGGTGGATGTCCAAATTCGACTACATGGGAGCTTCTTTCTGAGGGTCATATTGCCGAAAAGAGGGTTTCTGAGGCACTTTCGTGCTTGGAAAAAGCTTTTATGACTAGTGATTCAAAAAGTTGGAAACCCAAGCCAATAAAATTGGCTGCATTCCTTAAGCTTTGTCAAGACGAAGACGACATGGAGAGCGCCGAGGTTTTAATTGAGTTGTTGAGGAAGTCAGGATACCATAACGATGAAGCTTATGCGGCACTCATTAGCAAAGATGAACTGTCAAACAGGATTGGAAGAATTGATGACGTTGACAGTGAAAACATGGATGATGATGACTCTCAGGTGTTGTTTAGCCAAGTAGATAGTAGCTTTTGA 1659 0.3779 MISSSITVFSSTHIAVESTLTQHSEKLNVSFSLSSSLSYSHSLPFKQRVNVFYTDSGIGARVSVTCSISKIHNYGTRDYERKLNVKWNAIYKRISMMENPELGSASVLNQWENEGRNLTKWELCRVVKELRKYRRHERALQVYDWINNRPERFRISASDVAIQLDLIARVHGVSSAEGFFLNLTNDLKDKRTYGALLNAYVHSRSREKAESLLEVMRSKRFLIHSLPFNLMMTLYMNLKDYDKVDMLVSEMKEKKIQLDIYTYNIWLSSCGSQGSIEKMEQVFEQMSKDPTIIPNWSTFSTMAAMYIKMELFEKAQECLKKAEGRLLGRDKVPFHYLLSLYGSVGNKDEVYRVWNNYKSMFPSIPNLGYHAVISSLVRMDDIEGAEKLYEEWVSARPSDDSRIGNLLISWYLKKGKSEKVFSFFKHMTEGGGCPNSTTWELLSEGHIAEKRVSEALSCLEKAFMTSDSKSWKPKPIKLAAFLKLCQDEDDMESAEVLIELLRKSGYHNDEAYAALISKDELSNRIGRIDDVDSENMDDDDSQVLFSQVDSSF 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g04667 552 FunFam Pentatricopeptide repeat-containing protein 246 366 - -
Mepo1g04667 552 NCBIfam pentatricopeptide repeat 228 259 IPR002885 -
Mepo1g04667 552 NCBIfam pentatricopeptide repeat 261 289 IPR002885 -
Mepo1g04667 552 NCBIfam pentatricopeptide repeat 405 435 IPR002885 -
Mepo1g04667 552 NCBIfam pentatricopeptide repeat 192 221 IPR002885 -
Mepo1g04667 552 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 400 434 IPR002885 -
Mepo1g04667 552 PANTHER OS12G0527900 PROTEIN 77 516 - -
Mepo1g04667 552 SUPERFAMILY TPR-like 249 411 IPR011990 GO:0005515
Mepo1g04667 552 Gene3D Tetratricopeptide repeat domain 365 543 IPR011990 GO:0005515
Mepo1g04667 552 Pfam Pentatricopeptide repeat domain 247 306 IPR002885 -
Mepo1g04667 552 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 189 223 IPR002885 -
Mepo1g04667 552 FunFam Pentatricopeptide repeat-containing protein 101 245 - -
Mepo1g04667 552 Pfam PPR repeat 405 431 IPR002885 -
Mepo1g04667 552 Pfam PPR repeat 369 394 IPR002885 -
Mepo1g04667 552 Pfam PPR repeat 192 220 IPR002885 -
Mepo1g04667 552 Gene3D Tetratricopeptide repeat domain 164 327 IPR011990 GO:0005515
Mepo1g04667 552 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 259 289 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g04667 Mepo-Chr1 54519284 54523532 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g04667 28 548 EF-hand Containing Proteins AT1G02150 57.774 0.0 627
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g04667 - - tpra:123882972 793.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g04667 1 54519284 54523532 Mepo1g04667 1 54519284 54523532 ECH