Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01236 ATGAGTCTCCTTCGACTTCAATCTTCTCTTCACAACCAAACCCTCTCTCTCTCTTGTTCTCTCTCTTACTCTCTCCCCTTCAACCCCTCTTCCTCCACTCTCCCCCTCCCTCGCACGCGCCCCCCGTGTCTCCCGCGCCTCTCGGTTGTGACGTGTTCCGTCTCCAAGGTCCACAGCTACGGCACCGTCGACTACGAGCGCCGCCCCATTGTGCGGTGGAATGACGTGTACCGCCGGATATCGCTCAACCCGGACACCGATGTGACCTCCGCCGAGGTGCTCAACCGGTGGGAGAACGAAGGCAGACACCTCACCAAGTGGGAACTCTCGAGAGTCGTCAAGGAGTTGAGAAAATACAAAAAATTTCGGAGAGCCCTTGAGGTATATGATTGGATAAACAATAGGCCAGAGCGGTTTAGAGTTTCTGAGAGTGATGCAGCAATTCAGTTAGATCTAATTGCAAAAGTTCGTGGACTTTCTAGTGCGGAAGTGTTCTTTCTGAGTCTGGACGATAAGTTAAAAGATAAGAGGACTTATGGTGCCCTTTTGAATGTATATGTGCATTCCAGATCGAAGGAAAAGGCAGAATCTTTATTTGACACAATGAGGAGTAAAGGGTTTGTGATACATCCACTACCATTTAATGTAATGATGACTCTCTACATGAATGTAAAGGAATATGTTAAAGTTGATATGTTGGTTTCTGAAATGATAGAAAAACAGATACAGCTAGATATCTATACATATAATATCTGGTTATCATCTTGTGGATCTCAAGGATCAATAGAGAAGATGGAAAAAGTGTTTGAACAGATGGAAAGGGATCCTACCATCATCCCTAACTGGTCTACATTCAGCACAATGGCTTCAATGTACATTAAGATGGATCAGACTGAAAAAGCAGAAGAGTGCTTAATAAAGGTTGAGAATAGAATTAAAGGTCGTGATAGAATTCCTTTTCATTATCTCCTGAGTTTATATGGACGTGTTGGAAACAAAGGCGAAGTTTATCGTGTGTGGAATACGTACAAATCAGTTTTTCCAAAAAATATACCAAACTTGGGATACCATGCTATTATTTCTTCTCTGGTTAAATTGGATGATATAGATGGTGCAGAAAGACTCTACAAGGAATGGCTTTCAGTAAAGTTAAGTTATGATCCTCGAGTGGGAAACCTTCTTCTAGCCCAGTATGTAGTGGCAGGTGATGAAGATAAAGCTTTGAGTTTCTTCAAACAGATGAAGGAGGATGGTGGCATTCCAAATTCAAATACATGGGAGATTCTTTCTGAGGGCCACATTGCAGATAAGAGGATTTCTGAGGCCTTGTCCTGCTTGAAAGAGGCTTTCATGGTCGCTAATAATTCAAAGAGTTGGAGACCGAAGCCCTTGAACTTGTCTGCATTCCTTGACCTTTGCCAAGAACAAGATGACATGGAAAGTGCTGAAACTTTAATTAGACTGTTGAAGCAGGCCAAATTTAGTAAAAATAAAGCTTATGCATCACTCATTGGCTCATCTGATGACGAATTATTGTCAAGCAAGATTGATACAGCAGATAGAATTGCTGATATCGATGACAGTGAAAACATGGATGGCGACGACTCTCAAATGTTGTTGAACCAACTAGAGAGTACCTTTTGA 1644 0.424 MSLLRLQSSLHNQTLSLSCSLSYSLPFNPSSSTLPLPRTRPPCLPRLSVVTCSVSKVHSYGTVDYERRPIVRWNDVYRRISLNPDTDVTSAEVLNRWENEGRHLTKWELSRVVKELRKYKKFRRALEVYDWINNRPERFRVSESDAAIQLDLIAKVRGLSSAEVFFLSLDDKLKDKRTYGALLNVYVHSRSKEKAESLFDTMRSKGFVIHPLPFNVMMTLYMNVKEYVKVDMLVSEMIEKQIQLDIYTYNIWLSSCGSQGSIEKMEKVFEQMERDPTIIPNWSTFSTMASMYIKMDQTEKAEECLIKVENRIKGRDRIPFHYLLSLYGRVGNKGEVYRVWNTYKSVFPKNIPNLGYHAIISSLVKLDDIDGAERLYKEWLSVKLSYDPRVGNLLLAQYVVAGDEDKALSFFKQMKEDGGIPNSNTWEILSEGHIADKRISEALSCLKEAFMVANNSKSWRPKPLNLSAFLDLCQEQDDMESAETLIRLLKQAKFSKNKAYASLIGSSDDELLSSKIDTADRIADIDDSENMDGDDSQMLLNQLESTF 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01236 547 Gene3D Tetratricopeptide repeat domain 81 235 IPR011990 GO:0005515
Spst4g01236 547 Pfam PPR repeat 392 418 IPR002885 -
Spst4g01236 547 Pfam PPR repeat 356 380 IPR002885 -
Spst4g01236 547 Pfam PPR repeat 178 207 IPR002885 -
Spst4g01236 547 FunFam Pentatricopeptide repeat-containing protein 232 353 - -
Spst4g01236 547 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 387 421 IPR002885 -
Spst4g01236 547 NCBIfam pentatricopeptide repeat 178 208 IPR002885 -
Spst4g01236 547 NCBIfam pentatricopeptide repeat 392 422 IPR002885 -
Spst4g01236 547 NCBIfam pentatricopeptide repeat 247 275 IPR002885 -
Spst4g01236 547 FunFam Pentatricopeptide repeat-containing protein 87 231 - -
Spst4g01236 547 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 175 209 IPR002885 -
Spst4g01236 547 Gene3D Tetratricopeptide repeat domain 236 352 IPR011990 GO:0005515
Spst4g01236 547 PANTHER OS12G0527900 PROTEIN 67 504 - -
Spst4g01236 547 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Spst4g01236 547 Gene3D Tetratricopeptide repeat domain 353 524 IPR011990 GO:0005515
Spst4g01236 547 Pfam Pentatricopeptide repeat domain 233 293 IPR002885 -
Spst4g01236 547 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 275 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01236 Spst-Chr4 47206028 47209181 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01236 6 544 EF-hand Containing Proteins AT1G02150 55.413 0.0 609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01236 - - gmx:100780408 842.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g01236 4 47206028 47209181 Spst4g01236 4 47206028 47209181 ECH