Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01537 ATGCAAATCCCTCTCTCTCTTCACCCTCGCTCCTTCCTTCCAAACCCCGTCACGCGCCACAATCGCTCACTCTCCGCGCCACAACCCCACGCGCCTCCCTCGCTTCCACCCTTACCGCCCCACCCCAAAACGCCGCGTTTCGATTGCAGCCCTTCCCACCATACGCGCCCAAACGGCTTCCACTTCAAGCGCGGGAAGCTCGAGCTCGCGCGCAAAGTGTTCGACGAAATTCCCAAACGAGACGTTAACGCGTGGACTGCTATTATTACTGGTTTCGCCCGCAATGGAATGTCTTGGCAAGTTTTGGAGCATGTGAGGTTGATGTTAGTGGAAGGAATAAGTCCAAATTTGGTTGTGATGGCAGTAATTCTTGATGTTATTGGGGAGGTTGGTGCTCGAAATTTAGGTAGAGAGGCTCATGGTTTTGTGGTGAAGAGAATTTGGTATCACGAGGAAATTTCGGTTCTATCGGCGTTGATTGATATGTATTTGAAGTGTGGCGATGTTGGCTCTGGAAGCCGAATTTTGCATAGTGTGATGAAGAGGAAAGGTGATTGTTGGATTGGATTGATGTCGGGAAGACTTGAGGTGTCAATGAGGAATATTGTTCGTTTGAAGAGATTTAGGCCCGGTGGTGTTGCGGTTGCTTCTTTGCTTCCAATTTGTGCACAATTGAGGGCTTTGAGACATGGGAAGGAGGTTCATGCTTATGCTTTGAGGCATTGGTTGCTGCCTAATGTGTCCATAGTTTCGTCTTTGATGGTGTTGTACTCCAAGTGTGGCGTGATTGAGTATTCCATGAGACTTTTTGATGGAATGGCGCGGAGGAATGTGGTTTCGTGGACAGCCATGATTGATTCGTGTGTTGAAAATGGGCGTTTGTGTGAAGCAATTGGTGTGATGAGGTCAATGCTGTTGACGGAGCATAGGCCGGATACGGTTACCATGGCTAGGATGCTGCGTGTTTGTGGCAAGCTGAAAGTTTTAAGGCTTGGGAAGGAGGTTCATGGACAGGTATTGAAGAGGGGTTTTGTGGTAGTCCATTATGTTGCTGCAGAACTGATTGATATGTATGGGATTTGTGGAGATGTTGATAAGGCAAAGTTGTTGTTTAGTGCGATTCCTGTTAAAGGTTCGATGACATGGAGTGCTCTTATAAGGGCTTATGGGTATAAAGAATGGTATCAAGAGGCTGTGGACCTTTTTGATGACATGATTTCAAATGGTTGCTCTCCAAACCGCTTCACTTTTGAAGCTGTTTTATCAATTTGTGATAGAGCTGGATTTGTTGAAGATGCTTTTAGGATCTTCGATTTGATGTCGAGATTTAAAATTGAAGCATCCAAGGAACACTGCACTATAATGATTCGACTTCTTACCCGCTATGGTAAACTAGATGAGGCTCAAAGATTTGTGGAAATGAGTTCTTCCTTATAG 1437 0.46 MQIPLSLHPRSFLPNPVTRHNRSLSAPQPHAPPSLPPLPPHPKTPRFDCSPSHHTRPNGFHFKRGKLELARKVFDEIPKRDVNAWTAIITGFARNGMSWQVLEHVRLMLVEGISPNLVVMAVILDVIGEVGARNLGREAHGFVVKRIWYHEEISVLSALIDMYLKCGDVGSGSRILHSVMKRKGDCWIGLMSGRLEVSMRNIVRLKRFRPGGVAVASLLPICAQLRALRHGKEVHAYALRHWLLPNVSIVSSLMVLYSKCGVIEYSMRLFDGMARRNVVSWTAMIDSCVENGRLCEAIGVMRSMLLTEHRPDTVTMARMLRVCGKLKVLRLGKEVHGQVLKRGFVVVHYVAAELIDMYGICGDVDKAKLLFSAIPVKGSMTWSALIRAYGYKEWYQEAVDLFDDMISNGCSPNRFTFEAVLSICDRAGFVEDAFRIFDLMSRFKIEASKEHCTIMIRLLTRYGKLDEAQRFVEMSSSL 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01537 478 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN, CHLOROPLASTIC 61 478 - -
Cca01g01537 478 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 277 311 IPR002885 -
Cca01g01537 478 MobiDBLite consensus disorder prediction 1 60 - -
Cca01g01537 478 Gene3D Tetratricopeptide repeat domain 59 135 IPR011990 GO:0005515
Cca01g01537 478 Gene3D Tetratricopeptide repeat domain 351 477 IPR011990 GO:0005515
Cca01g01537 478 Gene3D Tetratricopeptide repeat domain 156 350 IPR011990 GO:0005515
Cca01g01537 478 MobiDBLite consensus disorder prediction 29 46 - -
Cca01g01537 478 TIGRFAM PPR: pentatricopeptide repeat domain 381 413 IPR002885 -
Cca01g01537 478 TIGRFAM PPR: pentatricopeptide repeat domain 279 313 IPR002885 -
Cca01g01537 478 Pfam PPR repeat 354 377 IPR002885 -
Cca01g01537 478 Pfam PPR repeat 251 278 IPR002885 -
Cca01g01537 478 Pfam PPR repeat 279 305 IPR002885 -
Cca01g01537 478 PANTHER - 61 478 - -
Cca01g01537 478 Pfam PPR repeat family 379 422 IPR002885 -
Cca01g01537 478 Pfam Pentatricopeptide repeat domain 80 129 IPR002885 -
Cca01g01537 478 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 413 447 IPR002885 -
Cca01g01537 478 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 81 115 IPR002885 -
Cca01g01537 478 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 378 412 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01537 Cca-Chr1 33741927 33743595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01537 62 473 Glycoside Hydrolase AT3G49170 25.463 2.22e-45 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01537 - - gmx:100780947 762.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01537 01 33741927 33743595 Cca07g02062 07 48142025 48144248 PCT