Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1736 ATGGTTACATGCAATTCCCACCTCTCTAGTAGTGCTACTCCTTCACCCCTTCCAATCTCAATTCACAGGTTCCAAAACTCTTATCAGTATCACTCCCCCACTTTGAAATTCACACCTCACATCAACCTCAAAGCAACACAACAACTCCACGGCCACTTCATCAAAACCAGTTCCAATTGCAGTTATCAAGTCCCTTTTGCAGCACTTGAATCCTATTCTAGCAATGCAGCAATTCACAGCTTCCTTATAACATCTTACATCAAGAACAACAGCCCTGCATATGCCGCGAAAATCTACGCCTACATGCGTAGGACAGACACCGAAGTGGACAATTTTATCATACCATCGGTTCTCAAAGCATGCTGCCTCATCCCTTCAATTCTACTAGGACAAGAGGTTCATGGTTTTGTGGTGAAAAATGGATTTCATGGGGATGTTTTTGTGTGCAATTCTTTGATCGTGATGTACAGCGAGATTGGATGCTTGGGATCGGCACGGCTACTATTTGATAAGATTGAGAACAAAGATGCTGTTTCTTGGAGTACTATGATTAGGAGCTATGATAAAAGTGGGTTGCTTGATGAAGCATTGGACCTTCTGAGAGATATGCATGTTATGAGAGTGAAGCCTAGTGAAATTGCAATGATAAGCATCACACATGTCTTGGCAGAACTTGCTGATTTGAAATTAGGGAAAGCCATGCATGCTTGTGTAGTAAGGAATGGGAAGTGTGAGAAATCAGGAGTTCCTCTAAGTACTGCTTTGATTGACATGTATGTTAAATGTGGAAATTTGGCTTATGCAAGAAGGGTTTTTGATGGCATGTCTGAGGCTAGCATCGTTCCGTGGACTGCTATGATTTCAGCTTATATTCATTGCAATGATTTGAATGAAGGTGTGAGATTGTTTGTGAAAATGCTGGGAGAGGGTGTGTTTCCAAATGAGGTTACAATGCTTAGTTTGGTCAAAGAATGTGGCACAGCAAGAGCTCTAGAACTAGGAAAGTGGTTACATGCTTTCATGTTAAGAAATGGATTTACCATGTCTTTGGTTCTGGCCACTTCTTTTATTGACATGTATGGCAAATGTGGTGATGTTAGAAGTGCGAGATCTGTTTTTGATAGCTTCAAGAGCAAGGATTTAATGATGTGGAGTGCCATGATTTCAGCTTATGCACAGAACAATTGTATAGATGAAGCCTTTGATATCTTTGTTCACATGACTGGTTGTGGAATAAGGCCTAATGAGAGAACCATGGTTAGCCTCCTCATGATATGTGCAAAAGCTGGATCACTTGAAATGGGTAAGTGGATCCATTCTTACATAGACAAGCAAGGAATTAAAGCAGATGTGATTCTTAAAACTTCTTTGGTGGACATGTATGCCAAGTGTGGAGACATGGATACAGCTCATAGATTGTTTGCGGTGGCCACGGATTGTGACGTTTCAATGTGGAATGCCATGATATCTGGTTTTGCAATCCATGGTCATGGTGAGGCAGCATTGGAACTCTTAGAAGAAATGGAAGCACTAGGGGTTATCCCTAATGACATCACATTCATTGGAGCCCTTCATGCTTGTACAAAACAGTTTCTCTCATTGGAACCCCACAAAAATGGCTATAATGTTCTGATGTCTAACATATATGCATCAGAAAATAGATGGAGTGATGTTGCATACATAAGGAGAGCTATGAAAGATGAGGGAATTGTTAAAGAACCAGGTGTTAGCTCCATTGAAGTGAATGGATCACTTCATGAATTCATAATGGGAGATAGGGAACACCCAGATGCTAAAAAAATCTATGAGATGATTGGTGAGATGAGAGAAAAACTAGAAGATGGACAATGA 1851 0.4073 MVTCNSHLSSSATPSPLPISIHRFQNSYQYHSPTLKFTPHINLKATQQLHGHFIKTSSNCSYQVPFAALESYSSNAAIHSFLITSYIKNNSPAYAAKIYAYMRRTDTEVDNFIIPSVLKACCLIPSILLGQEVHGFVVKNGFHGDVFVCNSLIVMYSEIGCLGSARLLFDKIENKDAVSWSTMIRSYDKSGLLDEALDLLRDMHVMRVKPSEIAMISITHVLAELADLKLGKAMHACVVRNGKCEKSGVPLSTALIDMYVKCGNLAYARRVFDGMSEASIVPWTAMISAYIHCNDLNEGVRLFVKMLGEGVFPNEVTMLSLVKECGTARALELGKWLHAFMLRNGFTMSLVLATSFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISAYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMGKWIHSYIDKQGIKADVILKTSLVDMYAKCGDMDTAHRLFAVATDCDVSMWNAMISGFAIHGHGEAALELLEEMEALGVIPNDITFIGALHACTKQFLSLEPHKNGYNVLMSNIYASENRWSDVAYIRRAMKDEGIVKEPGVSSIEVNGSLHEFIMGDREHPDAKKIYEMIGEMREKLEDGQ 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1736 616 Pfam PPR repeat family 481 527 IPR002885 -
Aed2g1736 616 Pfam PPR repeat family 279 325 IPR002885 -
Aed2g1736 616 Gene3D Tetratricopeptide repeat domain 77 247 IPR011990 GO:0005515
Aed2g1736 616 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 529 613 - -
Aed2g1736 616 Gene3D Tetratricopeptide repeat domain 441 532 IPR011990 GO:0005515
Aed2g1736 616 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 529 613 - -
Aed2g1736 616 TIGRFAM PPR: pentatricopeptide repeat domain 484 516 IPR002885 -
Aed2g1736 616 TIGRFAM PPR: pentatricopeptide repeat domain 253 283 IPR002885 -
Aed2g1736 616 TIGRFAM PPR: pentatricopeptide repeat domain 178 211 IPR002885 -
Aed2g1736 616 TIGRFAM PPR: pentatricopeptide repeat domain 283 315 IPR002885 -
Aed2g1736 616 TIGRFAM PPR: pentatricopeptide repeat domain 383 416 IPR002885 -
Aed2g1736 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 279 313 IPR002885 -
Aed2g1736 616 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 262 529 - -
Aed2g1736 616 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 262 529 - -
Aed2g1736 616 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 21 416 - -
Aed2g1736 616 Pfam PPR repeat 354 380 IPR002885 -
Aed2g1736 616 Pfam PPR repeat 455 474 IPR002885 -
Aed2g1736 616 Pfam PPR repeat 383 412 IPR002885 -
Aed2g1736 616 Pfam PPR repeat 178 205 IPR002885 -
Aed2g1736 616 Pfam PPR repeat 253 278 IPR002885 -
Aed2g1736 616 Gene3D Tetratricopeptide repeat domain 248 329 IPR011990 GO:0005515
Aed2g1736 616 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 21 416 - -
Aed2g1736 616 Pfam E motif 529 580 IPR046848 -
Aed2g1736 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 481 515 IPR002885 -
Aed2g1736 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 380 414 IPR002885 -
Aed2g1736 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 176 210 IPR002885 -
Aed2g1736 616 Gene3D Tetratricopeptide repeat domain 330 440 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1736 Aed-Chr2 21950276 21952366 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1736 61 608 Glycoside Hydrolase AT3G49170 25.581 2.91e-60 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1736 - - gmx:100782031 931.398