Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu09g00592 ATGGTTACATGCAATTCACACTTCTATGGTTCTGCTCCTTCACTTCTTCCTATCTCGGTTCGAAAGTTCCAAAGTTCTTGTGAATATCACTCCATAGCCTCTTTGAAATTCACTCAAGTCTCAGCAAAAGAGAAGAAGACAAAACCAAAGGTGCCTCCAATCCAAAATGAACTTCACATCAACCTTGTAGAAACACAACAGCTTCATTGCCAGTTGCTCAAGAACTGTTCCGATTGCGCTTATAGACTCACTTTTCCTGCGCTTAAGTCCTACTCGAGCAATGCAGCTCTTTACAGCTTCTTGATAACATCTTACATTAAGAACAATTGCCCTGAAGATGCAGTGAAAATATATATCCATATGCGAAAAACCGATGCCAAAATTGACAATTTCATCATACCATCAGCTCTCAAAGCATGCTGTGTTGTCCCTTCAGCTCTGCTAGGACAAGAGGTGCATGGTTTTGTGGTCAAGAATGGATTTCATAGTGATGTTTTTGTCTGCAATGCATTGATGATGATGTACAGTGAGGTTGGAAACTTGGCATCTGCATGCCAATTATTCGACAAGATTGAGAAAAGAGATGCTGTCTCTTGGAGTATTATGCTTCGAAACTATAGTCGCCACGGTATGCTCAATGAAGCATTGAACCTTGTGAGAGAAATGCATGCTATTGGAGTGAAGCCTAGTGAAATTGCAATGATAAGCATCATTCATGTAATTGCAGAACTTGCTGATATGAAATTGGGTAAAGGCATTCATGCTTATGTCACAAGGAACATGAGCTATGAGAAACCAAGTGTTCCTCTAAGTACTGCTTTGATAGATTTGTATGCTAAATGTGCAAATTTAGCTTATGCAAGAAGAATTTTCGACAATTTGTCCGCGGCAAGTATAATCTCCTGGACTGCTATGATTGCAGCCTATATCCATTGCAATGATTTGAATGAGGGTTTTAGGCTGTTTATCAAAATTCTAGATGAGGGTGTGTTTCCAAATGATATCACAATCCTTAGTTTGGTCAAAGGATGCGGCGCAGCCAGAGCACTAAAACTAGGCAAGTTGTTACATGCTTTTACATTAAGAAATGGGATTGCCATGTCTTTAAATCTAGCCACCGCTTTTCTTGATATGTATGGCAAATGCAGCGATGTAAGAAGCGCGAGATCTGTTTTCAATAATAGCACCAAGAACAAAGATTTAATGATGTATAGCGCCATGATTTCGGCTTATGCGAAAGCTGATTGTATAGATGAGGCATTTGATATATTTGCTCAGATGACTGGATGTGGAATTAAACCAAATGAGATAACCATGGTTAGCCTCCTTTCGCTATGTGCAAAATCTGGATCACTTGAAATGGGTAAGTGGATACATTCTTACTTAGACAAACAAGGAATCAAAGCAGATATGGTTCTGAAAACATCTTTGGTGGACATGTATTCGAAGTGTGGAGACATAGATACAGCTTATGGACTATTCATCAAGGCCAACGACCGAGATATTTCTATGTGGAATGCCATGATATCTGGTTTTGCAATGCATGGTCATGGTAATTCAGCATTGGAACTCTTTGCTGAAATGGAAGCACAAGGAGTTATCCCTAATGACATAACATTCATTGCAGTTCTTCATGCTTGTAGCCATGCCGGATTGGTTCAAGAAGGGAAGAGGCTGTTTTGCAGAATGGTTAATGAATTCAGTTTGGTCCCAAAGATTGAACACTATGGCTGTATGGTAGACCTTCTCAGTCGAGCAGGATCACTCGAAGAAGCTCAAGAACTAATTAAGGACATGCCTATGAGGCCAAACTCGGCTGTATTAGGATCTTTTCTTGCTGCTTGCAAAGTTCACAAAAATGTGAACCTTGCTGAATGGGCTGCAAAACAGTTTCTATCATTAGAACCCGAAAAATGTGGATACAATGTCCTAATGTCAAACATCTGGGCTGCATCAAACAGATGGGAAAATGTTGCTGATATAAGGAGAGCTATGAAGGATGCAGGGATTCATAAAGAACCGGGTTTCAGCTCCATTGAAGTGCATGGAACGATTCATGAATTTGTAATGGGAGATAGAGAACACCCAGAAACACCAAAGATTTATGAAATGATTGGTGAGATGAGAGAAAAGCTAGAACATGCTGGATACACTCCAAATGTATCTGTTGTGCTGAAGAACATAGATATGGAGGAAAAAGAGAGTGCAGTAAATTATCACAGTGAAAAACTTGCAATGGCTTATGGTTTGATTAGCACAGGTCATGGAATTCAGCTTCGGATTTTGAAGAATCTTAGAATATGTGAAGACTGTCATAATGCAACAAAGTTGGTGTCCAAGATTTATGGGAGGGAGATAATTGTGAGGGATCCATTTTGCGGCGGTTTTCTCTCCCTCCCTCCTCTCTCAACGCAGTCCACAGAAAATTTCTGTGTGTATCTCAAAAGCACTAGTGATGTTTCTGGAGAAGGTTTGAGTCTTGTGTTCAGGCGTTGGGCTACTAAAAAGACAGCCGGTTCAACAAAGAATGGACGAGATTCAAAACCCAAGAACCTTGGAGTGAAAAAATTTGGTGGGGAGAGGGTGATACCGGGGAATATCATTGTTCGGCAACGCGGCACTCGCTTTCATCCGGGGAACTATGTCGGAATCGGAAGGTCATGTCCTTCACCCTATGTATTCAGATGCTTCTGCCTCCGAACTAAAAGTTGCTGTCTAAGTTTTAAACTACTAACATTCATGTGCATCTTCTATGTGCTTGAAGTTTAA 2769 0.4052 MVTCNSHFYGSAPSLLPISVRKFQSSCEYHSIASLKFTQVSAKEKKTKPKVPPIQNELHINLVETQQLHCQLLKNCSDCAYRLTFPALKSYSSNAALYSFLITSYIKNNCPEDAVKIYIHMRKTDAKIDNFIIPSALKACCVVPSALLGQEVHGFVVKNGFHSDVFVCNALMMMYSEVGNLASACQLFDKIEKRDAVSWSIMLRNYSRHGMLNEALNLVREMHAIGVKPSEIAMISIIHVIAELADMKLGKGIHAYVTRNMSYEKPSVPLSTALIDLYAKCANLAYARRIFDNLSAASIISWTAMIAAYIHCNDLNEGFRLFIKILDEGVFPNDITILSLVKGCGAARALKLGKLLHAFTLRNGIAMSLNLATAFLDMYGKCSDVRSARSVFNNSTKNKDLMMYSAMISAYAKADCIDEAFDIFAQMTGCGIKPNEITMVSLLSLCAKSGSLEMGKWIHSYLDKQGIKADMVLKTSLVDMYSKCGDIDTAYGLFIKANDRDISMWNAMISGFAMHGHGNSALELFAEMEAQGVIPNDITFIAVLHACSHAGLVQEGKRLFCRMVNEFSLVPKIEHYGCMVDLLSRAGSLEEAQELIKDMPMRPNSAVLGSFLAACKVHKNVNLAEWAAKQFLSLEPEKCGYNVLMSNIWAASNRWENVADIRRAMKDAGIHKEPGFSSIEVHGTIHEFVMGDREHPETPKIYEMIGEMREKLEHAGYTPNVSVVLKNIDMEEKESAVNYHSEKLAMAYGLISTGHGIQLRILKNLRICEDCHNATKLVSKIYGREIIVRDPFCGGFLSLPPLSTQSTENFCVYLKSTSDVSGEGLSLVFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGIGRSCPSPYVFRCFCLRTKSCCLSFKLLTFMCIFYVLEV 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu09g00592 922 Gene3D Tetratricopeptide repeat domain 350 464 IPR011990 GO:0005515
Adu09g00592 922 PRINTS Ribosomal protein L27 signature 835 859 IPR001684 GO:0003735|GO:0005840|GO:0006412
Adu09g00592 922 PRINTS Ribosomal protein L27 signature 860 884 IPR001684 GO:0003735|GO:0005840|GO:0006412
Adu09g00592 922 Pfam Ribosomal L27 protein 833 886 IPR001684 GO:0003735|GO:0005840|GO:0006412
Adu09g00592 922 PANTHER - 396 725 - -
Adu09g00592 922 PANTHER - 71 211 - -
Adu09g00592 922 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 400 434 IPR002885 -
Adu09g00592 922 Pfam DYW family of nucleic acid deaminases 716 791 IPR032867 GO:0008270
Adu09g00592 922 Pfam PPR repeat family 400 447 IPR002885 -
Adu09g00592 922 Pfam PPR repeat family 501 548 IPR002885 -
Adu09g00592 922 Pfam PPR repeat family 298 344 IPR002885 -
Adu09g00592 922 PANTHER - 164 309 - -
Adu09g00592 922 Gene3D Tetratricopeptide repeat domain 475 746 IPR011990 GO:0005515
Adu09g00592 922 Gene3D Tetratricopeptide repeat domain 95 264 IPR011990 GO:0005515
Adu09g00592 922 Pfam PPR repeat 475 496 IPR002885 -
Adu09g00592 922 Pfam PPR repeat 197 227 IPR002885 -
Adu09g00592 922 Pfam PPR repeat 167 194 IPR002885 -
Adu09g00592 922 Pfam PPR repeat 575 600 IPR002885 -
Adu09g00592 922 Pfam PPR repeat 98 123 IPR002885 -
Adu09g00592 922 ProSitePatterns Ribosomal protein L27 signature. 865 879 IPR018261 GO:0003735|GO:0005840|GO:0006412
Adu09g00592 922 Gene3D - 837 888 - -
Adu09g00592 922 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 195 229 IPR002885 -
Adu09g00592 922 Pfam E motif 618 680 IPR046848 -
Adu09g00592 922 SUPERFAMILY Ribosomal L27 protein-like 833 887 - -
Adu09g00592 922 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 501 535 IPR002885 -
Adu09g00592 922 PANTHER - 286 412 - -
Adu09g00592 922 PANTHER - 164 309 - -
Adu09g00592 922 PANTHER - 286 412 - -
Adu09g00592 922 PANTHER - 396 725 - -
Adu09g00592 922 PANTHER - 71 211 - -
Adu09g00592 922 TIGRFAM PPR: pentatricopeptide repeat domain 403 436 IPR002885 -
Adu09g00592 922 TIGRFAM PPR: pentatricopeptide repeat domain 300 333 IPR002885 -
Adu09g00592 922 TIGRFAM PPR: pentatricopeptide repeat domain 197 230 IPR002885 -
Adu09g00592 922 TIGRFAM PPR: pentatricopeptide repeat domain 504 536 IPR002885 -
Adu09g00592 922 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 298 332 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu09g00592 Adu-Chr9 7553293 7559238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu09g00592 98 790 Glycoside Hydrolase AT3G49170 34.517 1.78e-140 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu09g00592 - - adu:107464415 1571.99