Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0636 ATGCTCCTTCAACAATTTGTGTCTCTCAAAAACCCTAACACTCCTCACATTCTCTCCTCTTCCCTCTCTTATTCTTCGGCAACACTTCCCTCCGTCTTCAACCCTTCTTCTTCCACCTTCCCTCACGCGCAACTCACGTGTCCTCGCACCCTCTCTGTCACGTGCACTGCCTCCAACGCCCAAACCGTGGGTTACAGGCGAAAACCCGCTGAACCGTGGAAAGCTATATGCAAGAGGATATCGTTGATTGAGAAGCCGGAAGTGGATTCTTCTACTGTGTTGAATCAGTGGGAGAGTAAAGGAAAATGGATCAAGAAATTGGATGTTTGTAGAGTCATCAAAGACTTGAGAAAATTCAACAAGCATAGGAGGGCACTTGAGGTATATGATTGGATGGACAGAAGACCAGAGAGATATAGAATAACTCCGAGTGACATTGCAATTCAGTTAGATCTAATTGCCAAAGTTCATGGAGCTCCTAGTGCAGAAGCAGTTTTTCTGAGGCTGCCTGATAAGGCAAAAAACAAGAGGACATATGGAGCCCTTTTGAATATATATGTGCAGTTTCAGTTGAAGGAAAAGGCAGAATCTTTATTCGACACAATGAAGAGTAAAGGTCATGCAATTGAATCATTAACATTCAATGTAATGATGACTCTGTACATGAACTTCAAGGATTATGATCAGGTTGATATGTTGGTTTCAGAAATGATTAAGAACAACATAAAGCTGGATGCCTATTCATATAATATCTGGCTATCTTCTTGTGGATCTCAAGGATTAACAGAAAAGATGGAACAAGTGTTTGATCAGATGACAAAGGATCCTAACGTAGTTCCTAACTGTTCTACATTCACGACAATGGCTACAACTTACATTAAGATGAATCTGTTTGAAAAAGCAGAAGAGTGCATAAGAAACGCTGAGAGCAAAATCGAAGGTCGGGACAGAATACCTTATCATTATATCCTAAGTTTATATGGAAGTATTGGAAAGAAAGATGAAGTTTATCGCGTGTGGAATAACTATAAATTAAGTTTTCCCAGTATACCAAACTTGGGATACCATTCCGTTATTTCTTCCCTGGTTAGAATGGATGATATTGAGGGTGCAGAAAATCTCTATGAGCAATGGGTTTCAGCAAAAGCATTTTATGATCCTAGAATAGGAAACCTTCTCATAGGTTGGTATGTTAAGAATGGCAATACAGATAAAGCTATTAGGTTCTTTGACAGGATGAAAGAAGATGGTGGAGTTCCAAATCCAAGTACTTGGGAGCTTCTATCTATGTTGCATATTGCAGATAAAAGGGTAACTGAATCTCTGTCTTGCTTGAAAGAAGCTTTTGTGGCTAAAGGTTCAAAAAGTTGGAGACCAAATGCTACAAACTTGGACGCGTTCTTTAAGCTTTGTGAGGAACAAGGAGACATGGCATGCGCCGATGATTTGATCGAGTTGTTGAAGAAATCAGAATTTGTTAAAGATGAAGTTTATGCATCAATGATTGGCTTATCTGATGGTACCATTGGCAAAGGTGAATGTTCAAGTAAGATTGATGCAGTAGATAAAACTATGGATGATAACTCGCAAATGTTGAACCAAATGGAAAGTAGTTTTTGA 1620 0.3938 MLLQQFVSLKNPNTPHILSSSLSYSSATLPSVFNPSSSTFPHAQLTCPRTLSVTCTASNAQTVGYRRKPAEPWKAICKRISLIEKPEVDSSTVLNQWESKGKWIKKLDVCRVIKDLRKFNKHRRALEVYDWMDRRPERYRITPSDIAIQLDLIAKVHGAPSAEAVFLRLPDKAKNKRTYGALLNIYVQFQLKEKAESLFDTMKSKGHAIESLTFNVMMTLYMNFKDYDQVDMLVSEMIKNNIKLDAYSYNIWLSSCGSQGLTEKMEQVFDQMTKDPNVVPNCSTFTTMATTYIKMNLFEKAEECIRNAESKIEGRDRIPYHYILSLYGSIGKKDEVYRVWNNYKLSFPSIPNLGYHSVISSLVRMDDIEGAENLYEQWVSAKAFYDPRIGNLLIGWYVKNGNTDKAIRFFDRMKEDGGVPNPSTWELLSMLHIADKRVTESLSCLKEAFVAKGSKSWRPNATNLDAFFKLCEEQGDMACADDLIELLKKSEFVKDEVYASMIGLSDGTIGKGECSSKIDAVDKTMDDNSQMLNQMESSF* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0636 539 PANTHER OSJNBB0038F03.9 PROTEIN 44 505 - -
Amo19g0636 539 Gene3D Tetratricopeptide repeat domain 76 221 IPR011990 GO:0005515
Amo19g0636 539 Pfam PPR repeat 178 206 IPR002885 -
Amo19g0636 539 Pfam PPR repeat 355 379 IPR002885 -
Amo19g0636 539 Pfam PPR repeat 391 417 IPR002885 -
Amo19g0636 539 Gene3D Tetratricopeptide repeat domain 227 348 IPR011990 GO:0005515
Amo19g0636 539 PANTHER OS12G0527900 PROTEIN 44 505 - -
Amo19g0636 539 Gene3D Tetratricopeptide repeat domain 349 537 IPR011990 GO:0005515
Amo19g0636 539 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 175 209 IPR002885 -
Amo19g0636 539 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 275 IPR002885 -
Amo19g0636 539 Pfam Pentatricopeptide repeat domain 233 291 IPR002885 -
Amo19g0636 539 TIGRFAM PPR: pentatricopeptide repeat domain 247 282 IPR002885 -
Amo19g0636 539 TIGRFAM PPR: pentatricopeptide repeat domain 213 246 IPR002885 -
Amo19g0636 539 TIGRFAM PPR: pentatricopeptide repeat domain 391 421 IPR002885 -
Amo19g0636 539 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 386 420 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0636 Amo-Chr19 9872680 9875762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0636 1 528 EF-hand Containing Proteins AT1G02150 50.281 0.0 541
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0636 - - gmx:100780408 647.121