Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00121 ATGGCAACTACGCCTCTGCAAAACCAAAGCTTTTCTCTTTCACTTTCATCTTCCTTCTGCTATTCCAATTATACTCTTCCCTTCAAACAAAGGGTTAGTGTCTGTTACAGTTACAGTGTAAGAAGAGCAATCTCAGTGACTTGTTCCATCTCAAAAGTCCACAACTATGGTACTGTTGATTATGAACGAAGACCCATTGTGAAATGGAATGTTCTTTACAAGAGAATCTCTATGATGAAAAATCCTGAATTGGGTTCTGCTTCTGTGTTGAATCAGTGGGAAAATGAAGGCAAAACTCTCACCAAATGGGAACTTTGTAGAATTGTCAAAGAGTTGAGAAAGTATAGAAGACATGATAAAGCTCTTCAGGTATATGAGTGGATGAACAATAGACCAGAGAGGTTTAGGATATCTGCTAGTGACGCAGCGATTCAGTTAGATCTAATCGCAAGAGTTCAGGGAATTTCTAGTGCAGAAAGATATTTTCTGAACCTGACTAATGATTTAAAAGACAAGAGGACATACGGTGCCCTCTTGAATGCGTATGTTCATTCTAGATCGAAAGAGAAGGCAGAATCATTACTCGACGTAATGAGGAGTAAAAATTACTTAATACATTCACTACCGTTTAATTTAATGATGACTCTTTACATGAACCTTGGGGATTATGATAAGGTTGATATGATGGTTTCAGAAATGACAGAAAAGAACATACAGCTAGATATATATACATATAATATCTGGTTATCTTCTTGTGGTTCTCGAGAATCAATAGAAAAGATGGAACAAGTGTTTGAACAGATGTCGAAGGATCCTACCATTATCGCTAACTGGAGTACATTTAGCACAATGGCAGCAATGTACATTAAGATGGAAATGTTTGAAAAGGCACATGAGTGCTTAAAAAAGATGGAGGTTAGAATATTAGGTCGAGATCGAATACCTTTTCATTATCTCCTGAGTTTGTATGGAGGCACTGGAAACAAGGACGAAGTTTATCGCGTGTGGAATAACTATAAATCAATGTTTCCAAGTATACCAAATATGGGATATCATGCTGTTATTTCTTCTCTCGTGAGAATAAACGATATTGAGGGTGCGGAAAAGCTTTATGATGAATGGGTTTTGGTACGGCCGTCTGATGATTCTAGAATAGCAAACCTTATTATAAGCTGGTATGTTAAGAAAGGTGAATTAGATAAAGCTTTTGATTTCTTTGAGCATATGATTGAAGGTGAAGGAAGTCCGAATTCAACTACATGGGAGATTCTTGCTGAGGCTCATATTGCCGAAAAGAGGATTTCAGACGCCCTGTCGTGCTTGAAAAAGGCTTTTAAGACTGGTGGTTCAAAGAGTTGGAAACTAAAGCCAGGAAAATTAGTTGCATTCCTTAAGCTTTGTCGAGACGAAGACGACATGGAGAGTGCTGAAGTTTTAATTGAGTTATTGAGGCAATCGGGATACCATAAAGACGAAAAGTATGCATCACTCATTGGCAATGGTGAACTGTCAAGCACGATCGAAAGAATTGATGATATTGTTGACAGTGGAAACATGGATGATGATGATTCTCAGGTGGTTTTCAACCAATTAGATAGTAGCTTTTGA 1608 0.3769 MATTPLQNQSFSLSLSSSFCYSNYTLPFKQRVSVCYSYSVRRAISVTCSISKVHNYGTVDYERRPIVKWNVLYKRISMMKNPELGSASVLNQWENEGKTLTKWELCRIVKELRKYRRHDKALQVYEWMNNRPERFRISASDAAIQLDLIARVQGISSAERYFLNLTNDLKDKRTYGALLNAYVHSRSKEKAESLLDVMRSKNYLIHSLPFNLMMTLYMNLGDYDKVDMMVSEMTEKNIQLDIYTYNIWLSSCGSRESIEKMEQVFEQMSKDPTIIANWSTFSTMAAMYIKMEMFEKAHECLKKMEVRILGRDRIPFHYLLSLYGGTGNKDEVYRVWNNYKSMFPSIPNMGYHAVISSLVRINDIEGAEKLYDEWVLVRPSDDSRIANLIISWYVKKGELDKAFDFFEHMIEGEGSPNSTTWEILAEAHIAEKRISDALSCLKKAFKTGGSKSWKLKPGKLVAFLKLCRDEDDMESAEVLIELLRQSGYHKDEKYASLIGNGELSSTIERIDDIVDSGNMDDDDSQVVFNQLDSSF 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00121 535 Pfam Pentatricopeptide repeat domain 230 271 IPR002885 -
Trre15g00121 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 171 205 IPR002885 -
Trre15g00121 535 NCBIfam pentatricopeptide repeat 210 241 IPR002885 -
Trre15g00121 535 NCBIfam pentatricopeptide repeat 387 417 IPR002885 -
Trre15g00121 535 NCBIfam pentatricopeptide repeat 243 270 IPR002885 -
Trre15g00121 535 NCBIfam pentatricopeptide repeat 174 202 IPR002885 -
Trre15g00121 535 Pfam PPR repeat family 385 425 IPR002885 -
Trre15g00121 535 Gene3D Tetratricopeptide repeat domain 349 527 IPR011990 GO:0005515
Trre15g00121 535 Gene3D Tetratricopeptide repeat domain 103 274 IPR011990 GO:0005515
Trre15g00121 535 Gene3D Tetratricopeptide repeat domain 275 348 IPR011990 GO:0005515
Trre15g00121 535 PANTHER OS12G0527900 PROTEIN 61 498 - -
Trre15g00121 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 382 416 IPR002885 -
Trre15g00121 535 SUPERFAMILY TPR-like 281 447 IPR011990 GO:0005515
Trre15g00121 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 241 271 IPR002885 -
Trre15g00121 535 FunFam Pentatricopeptide repeat-containing protein 228 348 - -
Trre15g00121 535 FunFam Pentatricopeptide repeat-containing protein 83 227 - -
Trre15g00121 535 Pfam PPR repeat 279 305 IPR002885 -
Trre15g00121 535 Pfam PPR repeat 351 374 IPR002885 -
Trre15g00121 535 Pfam PPR repeat 174 202 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00121 Trre-Chr15 844315 846752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00121 9 531 EF-hand Containing Proteins AT1G02150 56.788 0.0 618
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00121 - - tpra:123882972 831.632
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00121 15 844315 846752 Trre15g00121 15 844315 846752 ECH