Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0803 ATGGTTACAAGCAAGTCCCACCTCTCTAGTGCTCCTCCTTTACTTCTTCCAGTCTCAATTCACAAGCTCCAAAACTCTAATCAGTATCACTCCCCCACTTTGAAATTCACTCAACTCCAACCAAAACCGAATGTGCTTCCTATCCAACATGAACTGCACATCAACCTCAATGCAACACAACAACTCCATGGCCACTTCATCAAAACCTGTTCCAATTGCAGTTATCAAGTCCCTTTTGCTGCACTTGAATCCTATTCTAGCAATGCAGCAATTCATAGCTTCCTAATAACATCTTACATCAAGAACAACTGCCCTGCAGATGCGGCAAAAATCTACGCCTACATGCGTAGAACAGACACTGAAGTGGACAATTTTATCATACCATCAGTTCTCAAAGCATGCTGTCTTATCCCTTCAATCCTGCTAGGACAAGAGGTGCATGGTTTTGTGGTAAAAAATGGATTTCATAGGGATGTTTTTGTGTGTAATGCTttaatcatgatgtacagtggGGTTGGAAACTTGGCATCGGCACGCCTATTTTTTGATAAGATTGAGAACAATGATGCTGTTTCTTGGAGTACTATGATTAGGAGCTATGATAGGAGTGGGTTGCTTGATGAAGCCTTGGACCTTTTGAGAGATATGCATGTTATGGGAGTAAAGCCTAGTGAAATTGCAATGATAAGCATTACACATGTCTTGGCAGAAGTTGCTGATTTGAAATTGGGGAAAGCCATGCATGCATATGTACTGAGGAATCGGAACTGTGGGAAATCAGAAGTTCCTCTAAGTAGTGCTTTGATGGATATGTatgttaaatgtaaaaatttagcTTATGCAAGAAGACTTTTTGATGGCTTGTCTGATGCTAGTATCATTTCATGGACTGCTATGATTGCGGCCTACATTCATTGCAATAATTTGAGTGAAGGTCTAAGACTGTTTGTCAAAATGCTAGGAGACGATAATGCAATCAAAGCAGTCCTAGAGAGGTAG 999 0.3944 MVTSKSHLSSAPPLLLPVSIHKLQNSNQYHSPTLKFTQLQPKPNVLPIQHELHINLNATQQLHGHFIKTCSNCSYQVPFAALESYSSNAAIHSFLITSYIKNNCPADAAKIYAYMRRTDTEVDNFIIPSVLKACCLIPSILLGQEVHGFVVKNGFHRDVFVCNALIMMYSGVGNLASARLFFDKIENNDAVSWSTMIRSYDRSGLLDEALDLLRDMHVMGVKPSEIAMISITHVLAEVADLKLGKAMHAYVLRNRNCGKSEVPLSSALMDMYVKCKNLAYARRLFDGLSDASIISWTAMIAAYIHCNNLSEGLRLFVKMLGDDNAIKAVLER 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0803 332 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 189 223 IPR002885 -
Ssu2g0803 332 PANTHER - 49 216 - -
Ssu2g0803 332 PANTHER - 142 322 - -
Ssu2g0803 332 Pfam PPR repeat 294 321 IPR002885 -
Ssu2g0803 332 Pfam PPR repeat 191 221 IPR002885 -
Ssu2g0803 332 TIGRFAM PPR: pentatricopeptide repeat domain 191 225 IPR002885 -
Ssu2g0803 332 TIGRFAM PPR: pentatricopeptide repeat domain 294 320 IPR002885 -
Ssu2g0803 332 Gene3D Tetratricopeptide repeat domain 258 330 IPR011990 GO:0005515
Ssu2g0803 332 Gene3D Tetratricopeptide repeat domain 90 257 IPR011990 GO:0005515
Ssu2g0803 332 PANTHER BNACNNG07920D PROTEIN 49 216 - -
Ssu2g0803 332 PANTHER BNACNNG07920D PROTEIN 142 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0803 Ssu-Chr2 41778021 41780537 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0803 74 328 Glycoside Hydrolase AT3G49170 22.989 6.14e-20 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0803 - - gmx:100782031 554.673