Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4591 ATGCAAACCTCTGTTTCAACCTCTGCATCTCTTTCACTCCCTCTTCCTCCTCACTCCTTCCCTCCAATTCCAAACACTTTCCCCCTCTCCAACTTCAAACCTCTCTCCCTATCATCACAACAACAAAAAGAACCACTTCCCTCACCCTCAACACCACCTCACACAAAACCCCCACACCCCAATGACCCTTCTTCTCTCATCCAGTTACACTTCAAGCGTGGGAACGTTGACCTCGCGCGCCAAGTGTTTGAGGAAAGTCCCCGCAGAAGCGTTAGTGCTTGGAATGCCATGATCTCCGGTCTTGCTCACAATGGCTTTCCGAGGGAAGCGTTGGAATATGTGAGGCTAATGTTAGAGGAAGGAAAAAGGCCGAATTGGATTACCATGATGGTGATTCTTCCCATTTGTGCTAAGTTGAGGACACTGAAACAAGGGAAGGAGGTTCATGCTTATGCTTTGAAACGTCGGTTCCTGCCTCACGTGACCATGGTTTCTTCGTTGATGGTGATGTACTCGAAGTGCGGCGTGATTGGGTATTCCATTAGGCTGTTTGATGGAATGGAGAAAAAGAATGTGATTTTGTGGACGGCCATGATTGATTCGTGTGTGGAAAATGGGTTTCTGAATGAAGCTCTTGCTGTCATGAGGTCAATGCAATTGACGCGGCAGAGGGCAGACACGGTTACCTTAACGAGGATGTTGTGTGTTTGTGGCGAACTGAGACGCGTGAAGCTCGGGAAGGAGGTCCATGGGCAGGTTTTGAAACTGGGTTTTGCATCAGTGCATTATGTCGCTGCAGAACTTATCAACATGTATGGGGCTTGTGGAGTTTTTGATAATGCAAAGCTGGTGTTTGGTGCTGTTCCTGATAAAGGTTCAATGACATGGACTGCTCTTATAAGGGCATATGGATATAAAGAATGGTATCGAGAAGCAATTGACCTTTTCGATCTGATGATGTCGAATGGTTGTTCTCCAAACACCTTCACTTTTGAAGCTGTTCTTTCTATTTGCGATAGGGCTGGGTTTGTTGAAGATGCTTTTAGGTTCTTTGATTTAATGTCTACATATGAAATTGAAGCATCCAAGGAACACTGTACTTTTATGGTTCAACTTCTTACCCGCTATGGTAAACTAGATGAGGCTCAAAGATTTTTAGAAATGAGTCCTTCCTTGTAG 1179 0.4529 MQTSVSTSASLSLPLPPHSFPPIPNTFPLSNFKPLSLSSQQQKEPLPSPSTPPHTKPPHPNDPSSLIQLHFKRGNVDLARQVFEESPRRSVSAWNAMISGLAHNGFPREALEYVRLMLEEGKRPNWITMMVILPICAKLRTLKQGKEVHAYALKRRFLPHVTMVSSLMVMYSKCGVIGYSIRLFDGMEKKNVILWTAMIDSCVENGFLNEALAVMRSMQLTRQRADTVTLTRMLCVCGELRRVKLGKEVHGQVLKLGFASVHYVAAELINMYGACGVFDNAKLVFGAVPDKGSMTWTALIRAYGYKEWYREAIDLFDLMMSNGCSPNTFTFEAVLSICDRAGFVEDAFRFFDLMSTYEIEASKEHCTFMVQLLTRYGKLDEAQRFLEMSPSL* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4591 392 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 327 361 IPR002885 -
Lja3g4591 392 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 90 124 IPR002885 -
Lja3g4591 392 PANTHER - 120 392 - -
Lja3g4591 392 TIGRFAM PPR: pentatricopeptide repeat domain 93 126 IPR002885 -
Lja3g4591 392 TIGRFAM PPR: pentatricopeptide repeat domain 194 219 IPR002885 -
Lja3g4591 392 TIGRFAM PPR: pentatricopeptide repeat domain 295 328 IPR002885 -
Lja3g4591 392 PANTHER - 64 134 - -
Lja3g4591 392 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN, CHLOROPLASTIC 64 134 - -
Lja3g4591 392 Pfam PPR repeat family 292 336 IPR002885 -
Lja3g4591 392 Gene3D Tetratricopeptide repeat domain 58 150 IPR011990 GO:0005515
Lja3g4591 392 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN, CHLOROPLASTIC 120 392 - -
Lja3g4591 392 Pfam PPR repeat 64 89 IPR002885 -
Lja3g4591 392 Pfam PPR repeat 194 219 IPR002885 -
Lja3g4591 392 Pfam PPR repeat 93 121 IPR002885 -
Lja3g4591 392 MobiDBLite consensus disorder prediction 29 45 - -
Lja3g4591 392 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 191 225 IPR002885 -
Lja3g4591 392 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 292 326 IPR002885 -
Lja3g4591 392 Gene3D Tetratricopeptide repeat domain 151 256 IPR011990 GO:0005515
Lja3g4591 392 MobiDBLite consensus disorder prediction 1 66 - -
Lja3g4591 392 Gene3D Tetratricopeptide repeat domain 260 391 IPR011990 GO:0005515
Lja3g4591 392 MobiDBLite consensus disorder prediction 46 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4591 Lja-Chr3 87746266 87747447 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4591 65 390 Glycoside Hydrolase AT3G49170 27.711 3.02e-41 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4591 - - lja:Lj3g3v0594250.1 751.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4591 3 87746266 87747447 Lja1g2939 1 35704494 35707394 PCT