Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1735 ATGTTCAGCGCGCGTCCCACCAACACGGTGACGCATCCATCTTTCAAATTTTCTACGGAAATGCAAACGTACGTTTCATCTTCCCTCCACCTTCATCCTCACTCTCACTCGTTCCTTCCTTCCACGCGCCACACTCTCTCACTCTCCGCGCCACAAAACCACGCGCCTCCCTCGCCTCCGCCGCCGTCACTGCTCCACCCCAAACCGCCGCGTTTCGATTATGCCCCTTTCAATGAGGCGCCCCCGAACGATTTATGTTTCAAGCGCGGGAAGGTCGACCTTGCGCGCCAAGTGTTTGATGAAATTCCCAAACGGGACGCTAATGCGTGGAGTGCTATGATCATCGGTTTTGCGCGCAATGGAATGCTCAGGGAAGTTTTGGAGTATACTAGGTTGATGTTAGAGGAAGGAACAAATCCAAGTTTTGTTGTAATGACGGTTATTCTTGATGTTATAGGGGAAGTTCGTGCTCGCAATTTAGGTAGAGAGGCTCATGGTTATGTGCAGAAGAAGAATTTGTATTTCAAGGAAGTGTCGATACAATCGGCATTGATTGATATGTATTGGAAGTGCAGCGATGTTGGCTCAGGGAGTCGGGTTTTGTATAGTGTGATGAAGAGGTATGGTGATGGTTGGATTGGATTGATGTCAGGTAAACTTGAGGTGGAAATTAGGTCTATTGTCCGGTTGAAGAGGTTCCGACCTGGTGCTGTCGCAGTTGCTTCTTTGCTTCCGATTTGTGCACAATTGAGGGCTCTAAAGCAAGGGAAGGAGGTCCATGCTTATGCTTTGAGACACCGGCTTCTGCCTAATGTGTCGATAGTGTCTTCGTTGATGGTGTTGTACTCTAAATGTGGCATGATTGAGTATTCCATGAGACTGTTCGATGGAATGGAACGAAGGAACGTGGTTTCATGGACCGCCATGATTGATTCTTGCGTTGAAAATGGACATTTGTGTGAAGCAGTTGGTGTGATGAGGTCAATGGTATTGACAGAGCACAGGCCGGATATGGTTACCGTGGCTAGGATGTTGCGTGTTTGTGGTGAGCTGAGAGTTTTAAAGCTTGGGAAGGAGGTTCACGGGCAGGTATTGAAACGAGGTTTTGCATCAATCCATTATGTTGCTGCAGAACTGATTGATATGTATGGGATCTGTGGAGATGTTGATAAGGCGAAGTTGGTGTTTGGTGCGGTTCCTGTTAAAGGTTCAATGACATGGAGTGCTCTTATAAGGGCCTATGGGTATAAAGAGTGGTATCAAGAAGCGGTTAACCTTTTTGATAACATGATATCAAATGATTGCTCTCCAAACCGCTTCACTTTTGAAGCTGTTCTGTCTATTTGTAATAGAGCTGGATTTGTTGAAGATGTTTTTAGGATCTTTGATTTAATGTCGAGATATAAAATTGAAGCATCCAAGGAACATTGTACTTGCATGATTCAACTTCTTACCCGCTATGGGAAACTAGACGAGGCTCAAAGATTTGTAGAAATGAGTTCTTCCTTATAG 1512 0.4557 MFSARPTNTVTHPSFKFSTEMQTYVSSSLHLHPHSHSFLPSTRHTLSLSAPQNHAPPSPPPPSLLHPKPPRFDYAPFNEAPPNDLCFKRGKVDLARQVFDEIPKRDANAWSAMIIGFARNGMLREVLEYTRLMLEEGTNPSFVVMTVILDVIGEVRARNLGREAHGYVQKKNLYFKEVSIQSALIDMYWKCSDVGSGSRVLYSVMKRYGDGWIGLMSGKLEVEIRSIVRLKRFRPGAVAVASLLPICAQLRALKQGKEVHAYALRHRLLPNVSIVSSLMVLYSKCGMIEYSMRLFDGMERRNVVSWTAMIDSCVENGHLCEAVGVMRSMVLTEHRPDMVTVARMLRVCGELRVLKLGKEVHGQVLKRGFASIHYVAAELIDMYGICGDVDKAKLVFGAVPVKGSMTWSALIRAYGYKEWYQEAVNLFDNMISNDCSPNRFTFEAVLSICNRAGFVEDVFRIFDLMSRYKIEASKEHCTCMIQLLTRYGKLDEAQRFVEMSSSL 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1735 503 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 403 437 IPR002885 -
Aed2g1735 503 PANTHER - 84 503 - -
Aed2g1735 503 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 302 336 IPR002885 -
Aed2g1735 503 Gene3D Tetratricopeptide repeat domain 376 502 IPR011990 GO:0005515
Aed2g1735 503 Gene3D Tetratricopeptide repeat domain 84 222 IPR011990 GO:0005515
Aed2g1735 503 Gene3D Tetratricopeptide repeat domain 223 375 IPR011990 GO:0005515
Aed2g1735 503 TIGRFAM PPR: pentatricopeptide repeat domain 304 337 IPR002885 -
Aed2g1735 503 TIGRFAM PPR: pentatricopeptide repeat domain 440 472 IPR002885 -
Aed2g1735 503 TIGRFAM PPR: pentatricopeptide repeat domain 406 438 IPR002885 -
Aed2g1735 503 TIGRFAM PPR: pentatricopeptide repeat domain 109 141 IPR002885 -
Aed2g1735 503 MobiDBLite consensus disorder prediction 47 72 - -
Aed2g1735 503 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 438 472 IPR002885 -
Aed2g1735 503 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN, CHLOROPLASTIC 84 503 - -
Aed2g1735 503 MobiDBLite consensus disorder prediction 53 69 - -
Aed2g1735 503 Pfam PPR repeat 276 303 IPR002885 -
Aed2g1735 503 Pfam PPR repeat 304 330 IPR002885 -
Aed2g1735 503 Pfam PPR repeat 109 137 IPR002885 -
Aed2g1735 503 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 106 140 IPR002885 -
Aed2g1735 503 Pfam PPR repeat family 404 448 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1735 Aed-Chr2 21946447 21947958 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1735 108 498 Glycoside Hydrolase AT3G49170 24.878 5.83e-28 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1735 - - gmx:100780947 852.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g1735 2 21946447 21947958 Aed3g0473 3 3437326 3439353 PCT