Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0472 ATGAGTGTTCTTAGACTTGAATCTTCTCTTCACAACCAAACCCTTTCTCTCTCTTCTTCGCTCTCTTACTCTTTCCCCTTCAAGCTCTCTTCCTCCACTCTCCCCTTCGCTCTTACACGCGCCACGTGCCTCCCTCTGATAACGTGTTCCGTCTCCAAGGTCCACAGCTATGGCACCGTGGACTACGAGCGTCGCCCCATTGTGCGGTGGAACGAAGTGTACCGCCGGATAACGCTCAACCCGGACCCCGACATGAGCTCCGCCGAGGTGCTCAACCGGTGGGAGAACGAAGGCAAACACCTCACCAAGTGGGAACTCTCCAGAGTCGTCAAGGAGTTGAGGAAGTACAAGAAGTTTCGGAGAGCCCTTGAGGTATATGATTGGATAAACAATAGACCAGAGCGGTTTAGAGTTTCTGAGAGTGATGCAGCAATTCAGTTAGATCTAATTGCAAAGGTTCGTGGGTTTTCTAGTGCAGAAGTATTTTTTCTGAGTCTGGAAGATCAGTTAAAAAATAAGAGGACTTATGGTGCCCTTCTGAATGTATATGTGCATTCCAGATTGAAGGAAAAGGCAGAATCTTTATTTGACACAATGAGGAGTAAAGGATATGTAGTACATGCACTACCATTTAATGTAATGATGACTTTGTACATGAACGTAAAGGAATATGTTAAAGTTGATATGCTGGTTTCTGAAATGATGGAAAAAAAGATACAGCTAGATATCTATACATATAATATCTGGTTATCTTCTTCTGGATCCCAAGGATCTATAGAGAAGATGGAACAAGTGTTTGAACAGATGGAAAAAGATGCTACCATTATCCCTAACTGGTCTACATTCAGCACAATGGCTTCAATGTACATTAGGATGGATCAGACTGAAAAAGCAGAAGAGTGCTTAAGAAAGGTTGAGAGTAGAATTAAAGGTCGTGATAGAATACCTTTTCATTATCTCCTGAGTTTATATGGACGTGTTCGAAACAAAGACGAAGTTTATCGAGTTTGGAATTCGTACAAAACAGTTTTTCCAAAAAATACACCAAACTTGGGATACCATGCTATTATTGCTTCTCTGGTTAAATTGGATGATATTGCGGGTGCCGAAAAACTTTATCAGGAATGGGTTTCTGTAAAGTCAAGTTATGATCCTAGAGTAGGAAACCTTCTCCTAGGCTGGTATGTTGAGGCAGGTGATATTCATAAGGCTTTGAGTTTCTTCAAGCAGATGAAGGAGGATGGTGGTTTTCCAAATTCAAATACATGGGAGATTCTCTCGGAGGGCTACATTGCAGATAAGAGGATTTCTGAGGCCTTATCCTGCTTGAAAGACGCTTTTATGGTTGCTGATAATTCAAGGAGTTGGAGACCAAAGCCCTTGAACTTGTCTGCATTCCTTGAGCTTTGCCAAGAACAAGGTGACATGGAAAGTGCTGAGACTTTTATTGTACTGTTGAAGCTGTCCAAATTTAGTAAACATAAAACTTATGCATCACTTATTGGCTCATCTGGTGATGGATTATCAAGCAAGATTGATACAATAGGTAGAAATGATGATATCCACGACAGAGAAGACATGGATGGTGAGTCTGAAATGTTGTTGAACGAACTAGAGAGTAGCTTTTGA 1629 0.4156 MSVLRLESSLHNQTLSLSSSLSYSFPFKLSSSTLPFALTRATCLPLITCSVSKVHSYGTVDYERRPIVRWNEVYRRITLNPDPDMSSAEVLNRWENEGKHLTKWELSRVVKELRKYKKFRRALEVYDWINNRPERFRVSESDAAIQLDLIAKVRGFSSAEVFFLSLEDQLKNKRTYGALLNVYVHSRLKEKAESLFDTMRSKGYVVHALPFNVMMTLYMNVKEYVKVDMLVSEMMEKKIQLDIYTYNIWLSSSGSQGSIEKMEQVFEQMEKDATIIPNWSTFSTMASMYIRMDQTEKAEECLRKVESRIKGRDRIPFHYLLSLYGRVRNKDEVYRVWNSYKTVFPKNTPNLGYHAIIASLVKLDDIAGAEKLYQEWVSVKSSYDPRVGNLLLGWYVEAGDIHKALSFFKQMKEDGGFPNSNTWEILSEGYIADKRISEALSCLKDAFMVADNSRSWRPKPLNLSAFLELCQEQGDMESAETFIVLLKLSKFSKHKTYASLIGSSGDGLSSKIDTIGRNDDIHDREDMDGESEMLLNELESSF* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0472 542 Gene3D Tetratricopeptide repeat domain 81 252 IPR011990 GO:0005515
Pvu10g0472 542 Gene3D Tetratricopeptide repeat domain 253 345 IPR011990 GO:0005515
Pvu10g0472 542 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 242 276 IPR002885 -
Pvu10g0472 542 Pfam Pentatricopeptide repeat domain 230 289 IPR002885 -
Pvu10g0472 542 PANTHER OSJNBB0038F03.9 PROTEIN 46 503 - -
Pvu10g0472 542 Gene3D Tetratricopeptide repeat domain 348 512 IPR011990 GO:0005515
Pvu10g0472 542 PANTHER OS12G0527900 PROTEIN 46 503 - -
Pvu10g0472 542 SUPERFAMILY TPR-like 65 413 IPR011990 GO:0005515
Pvu10g0472 542 TIGRFAM PPR: pentatricopeptide repeat domain 175 205 IPR002885 -
Pvu10g0472 542 TIGRFAM PPR: pentatricopeptide repeat domain 389 419 IPR002885 -
Pvu10g0472 542 TIGRFAM PPR: pentatricopeptide repeat domain 244 272 IPR002885 -
Pvu10g0472 542 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 172 206 IPR002885 -
Pvu10g0472 542 SUPERFAMILY TPR-like 279 452 IPR011990 GO:0005515
Pvu10g0472 542 Pfam PPR repeat 389 415 IPR002885 -
Pvu10g0472 542 Pfam PPR repeat 175 203 IPR002885 -
Pvu10g0472 542 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 384 418 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0472 Pvu-Chr10 6898401 6902401 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0472 6 539 EF-hand Containing Proteins AT1G02150 54.766 0.0 599
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0472 - - gmx:100777139 786.949
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g0472 10 6898401 6902401 Pvu10g0472 10 6898401 6902401 ECH