Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g01535 ATGGAAGCCTCTGTTTCAGCGTCTGCGTCTCTAGCTCTGCGCCTACACTGTTTCCCGCCAAACACCATAAccacctccaccaccaccaactGCAGTGGTTTTCAGTCCTTCAAGTTGAGAGCTTCCACTGAATCCCTGTCGATTGCTAGAGAATCACCTGCAACTGCAAACCGTCACAGCCAAGTATCCAAATTTTCCGTCAAAAAGGTGAAACATTTCGCAGAAAAAGATGCTTTCCCTGAATCCCTACCCCTCCATAACAAAAACCCAAGTTCCATTTACAAGGACATCAAGAAATTCGCAAGGCAAGACAAGCTCCGAGAGGCTCTCACTATCTTGGATTACCTGGACCAACGGGGTATCCCTGTAAACGCGACAACTTTCTCTGCCCTCATTGCTGCTTGTATTCGAACCAAATCCTTGTCTGCGGGAAAGGAAATCCATACGCACATTCGGATTAATGGGCTCGAAAAGAACGAATTTTTGAGCACAAAACTTGTCCATATGTACACATCTTGCGGCTCCATGGCAGATGCTAAACAGGTGTTTAATGAGTGCTCCACCGCGACTGTGTATCCATGGAATGCCTTGCTCAGAGGAACTGTGATTTCAGGTAAACGGCAGTATGTTAATGTGCTTTCAACTTTTTCAGAAATGAGGGCATTGGGGCTTGAATTGAATGTGTACAGTTTCTCCAGTGTTATCAAAAGCATTGCAGGTGCATCAGCACTTTTCCAAGGTTTAAAGACTCATtccattttaatcaaaaacGGGTTTATTGATAGCCCAATTCTCCAAACGAGTTTGATTGATATGTATTTCAAATGTGGCAAGACTAAGCTTGCCCGGAAAGTGTTTGAGGAAAGtgctgaaaaagaaattgttgcATGGGGAGCAATGATTGCCGGTTTCACACACAACAGGCTCCATAGGGAAGCATTAGAGTATGTAAGGATGATGGTAGACGAagaaataaaaccaaattCAGTTATAGTGGCAACAGTTCTTCCTGCAATTGGTGAACTTTGTGCATGGAGACTAGGCCAGGAAGTTCATGCTTATGTTCTCAAGACAAAATCGTACTCAAGACAAATTCCAGTTCAAACTGCATTAATTGATATGTATTGTAAGTGTGGGGACATGAGTTCGGGAAGACGAGTTTTTTACAGTTCAATGGAGAGGAACACTGTTTGTTGGACTGCTTTGATGTCTGGTTATGCCAATAATGGGAGACTTGAACAGGCACTGAGGTCCATAGTTTGGATGCAACAAGAAGGGTTCAGGCCTGATGTTGTCACAATTGCCACTGTTCTTCCAATTTGTGCTGAGTTGAGGGCTCTGAAACAAGGGAAGGAACTTCATGCTTATGCTTTGAAACATTGGTTTCTACCCAATGTATCTTTAACTTCTTCGTTGATGGTAATTTACTCTAAGTGTGGCATACTGGAATATTctacaaaattattcaatggTATGGAGCGAAGGAATGTGATTTTGTGGACATCGATGATTGACTCATATGTAGAAAATGGATATCCATATGAAGCACTCGATGTGATTAGGTCAATGCAATTGTCAAAACATAGGCCAGACTCGGTTGCTATGGCAAGGATGTTGAGTGTTTGCAGCGAACTAAAACTTCTGAAGCTTGGAAAGGAGATTCATGGCCAGGTCTTGAAAAGGGACTTCACATCAGTTCATTTTGTTTCTGCTGAGCTTATCAACATGTATGGAACCTGTGGAGCTGTTAATAAAGCAAAGTTGTCATTTGATGCTGTCCCCGTTAAGGGTTCAATGACATGGACTGCTCTGATAAAGGCATATGGACATAATCAACTGAGTCAAGATGCAATTGGGCATTTTCATCAGATGAGATCAAAAGGTTTCTCTCCAAACCACTTCACTTTCAAAGAAGTTCTATCTATATGTGAAAGAGCTGGTTTTGTTGATGATGCTTGTAGGATTTTTAGTTTAATGTCTGgtaaatataaagttaaacCATCTAAGGAACACTGCTCTATAATGATCCGACTTCTGACACGTTTCGGTCGACTTGAGGAAGCACAGAGATTTACAGAAATGAGTTCATCCTTATA 2096 0.4008 MEASVSASASLALRLHCFPPNTITTSTTTNCSGFQSFKLRASTESLSIARESPATANRHSQVSKFSVKKVKHFAEKDAFPESLPLHNKNPSSIYKDIKKFARQDKLREALTILDYLDQRGIPVNATTFSALIAACIRTKSLSAGKEIHTHIRINGLEKNEFLSTKLVHMYTSCGSMADAKQVFNECSTATVYPWNALLRGTVISGKRQYVNVLSTFSEMRALGLELNVYSFSSVIKSIAGASALFQGLKTHSILIKNGFIDSPILQTSLIDMYFKCGKTKLARKVFEESAEKEIVAWGAMIAGFTHNRLHREALEYVRMMVDEEIKPNSVIVATVLPAIGELCAWRLGQEVHAYVLKTKSYSRQIPVQTALIDMYCKCGDMSSGRRVFYSSMERNTVCWTALMSGYANNGRLEQALRSIVWMQQEGFRPDVVTIATVLPICAELRALKQGKELHAYALKHWFLPNVSLTSSLMVIYSKCGILEYSTKLFNGMERRNVILWTSMIDSYVENGYPYEALDVIRSMQLSKHRPDSVAMARMLSVCSELKLLKLGKEIHGQVLKRDFTSVHFVSAELINMYGTCGAVNKAKLSFDAVPVKGSMTWTALIKAYGHNQLSQDAIGHFHQMRSKGFSPNHFTFKEVLSICERAGFVDDACRIFSLMSGKYKVKPSKEHCSIMIRLLTRFGRLEEAQRFTEMSSSL 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g01535 698 Gene3D Tetratricopeptide repeat domain 344 448 IPR011990 GO:0005515
Bva02g01535 698 Gene3D Tetratricopeptide repeat domain 240 343 IPR011990 GO:0005515
Bva02g01535 698 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 395 429 IPR002885 -
Bva02g01535 698 Pfam PPR repeat family 394 438 IPR002885 -
Bva02g01535 698 Pfam PPR repeat family 597 639 IPR002885 -
Bva02g01535 698 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN, CHLOROPLASTIC 70 698 - -
Bva02g01535 698 Gene3D Tetratricopeptide repeat domain 449 570 IPR011990 GO:0005515
Bva02g01535 698 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 597 631 IPR002885 -
Bva02g01535 698 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 293 327 IPR002885 -
Bva02g01535 698 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 496 530 IPR002885 -
Bva02g01535 698 Pfam PPR repeat 267 289 IPR002885 -
Bva02g01535 698 Pfam PPR repeat 295 323 IPR002885 -
Bva02g01535 698 Pfam PPR repeat 369 390 IPR002885 -
Bva02g01535 698 Pfam PPR repeat 499 524 IPR002885 -
Bva02g01535 698 Gene3D Tetratricopeptide repeat domain 91 210 IPR011990 GO:0005515
Bva02g01535 698 Gene3D Tetratricopeptide repeat domain 571 697 IPR011990 GO:0005515
Bva02g01535 698 PANTHER - 70 698 - -
Bva02g01535 698 TIGRFAM PPR: pentatricopeptide repeat domain 600 632 IPR002885 -
Bva02g01535 698 TIGRFAM PPR: pentatricopeptide repeat domain 499 532 IPR002885 -
Bva02g01535 698 TIGRFAM PPR: pentatricopeptide repeat domain 295 328 IPR002885 -
Bva02g01535 698 TIGRFAM PPR: pentatricopeptide repeat domain 397 431 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g01535 Bva-Chr2 18326973 18329189 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g01535 106 691 Glycoside Hydrolase AT3G49170 27.258 5.97e-73 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g01535 - - qsu:112006562 980.704